miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5128 5' -57.2 NC_001798.1 + 58675 0.66 0.863793
Target:  5'- gCCCGCCACCAccgCCgCCGucAGGGccgcGGCg -3'
miRNA:   3'- -GGGUGGUGGUa--GGgGGC--UCUCua--CUG- -5'
5128 5' -57.2 NC_001798.1 + 59103 0.66 0.861554
Target:  5'- gCCCAgCguggcggccuggaGCCAgagaugcgcgaaCCCCCGAGcGAUGGCa -3'
miRNA:   3'- -GGGUgG-------------UGGUa-----------GGGGGCUCuCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 59633 0.66 0.871122
Target:  5'- cUCCGCCGCCucggguccguAUCUCgCgGAGAGGgggGGCg -3'
miRNA:   3'- -GGGUGGUGG----------UAGGG-GgCUCUCUa--CUG- -5'
5128 5' -57.2 NC_001798.1 + 66000 0.66 0.870399
Target:  5'- uCCCACCACgA-CCCCUGucgccccAGGGcgauGUGGCg -3'
miRNA:   3'- -GGGUGGUGgUaGGGGGC-------UCUC----UACUG- -5'
5128 5' -57.2 NC_001798.1 + 68236 0.66 0.871122
Target:  5'- cCCCGCCgcgcgccacACCAcgCCCUCcAG-GAUGACa -3'
miRNA:   3'- -GGGUGG---------UGGUa-GGGGGcUCuCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 69324 0.68 0.780468
Target:  5'- uCCCGCgCGCCGggcUCCCCUGAG-GAUc-- -3'
miRNA:   3'- -GGGUG-GUGGU---AGGGGGCUCuCUAcug -5'
5128 5' -57.2 NC_001798.1 + 70208 0.69 0.752598
Target:  5'- gCCgGCCGCCcUCCCCCucGAGcGAgccGGCg -3'
miRNA:   3'- -GGgUGGUGGuAGGGGG--CUCuCUa--CUG- -5'
5128 5' -57.2 NC_001798.1 + 71092 0.66 0.885155
Target:  5'- gCCCGCgGUCGgcgugcgcgCCCCCGGGGacgcuGAUGGCg -3'
miRNA:   3'- -GGGUGgUGGUa--------GGGGGCUCU-----CUACUG- -5'
5128 5' -57.2 NC_001798.1 + 77958 0.66 0.885155
Target:  5'- gCUCGCCGCCAUCCaCCGccucggcuGGAGcgcGGCg -3'
miRNA:   3'- -GGGUGGUGGUAGGgGGC--------UCUCua-CUG- -5'
5128 5' -57.2 NC_001798.1 + 78964 0.66 0.891848
Target:  5'- gCCGCguccgggggggCGCCuggaaGUCCCCCGAGGGGUuccGCg -3'
miRNA:   3'- gGGUG-----------GUGG-----UAGGGGGCUCUCUAc--UG- -5'
5128 5' -57.2 NC_001798.1 + 79980 0.76 0.357565
Target:  5'- gUCCGCCGCCGggCCCCCGGGGGucccaGCg -3'
miRNA:   3'- -GGGUGGUGGUa-GGGGGCUCUCuac--UG- -5'
5128 5' -57.2 NC_001798.1 + 81253 0.71 0.618118
Target:  5'- aCCGCCGCCcgCgaCCCGcgggaccuugcggggGGGGAUGGCg -3'
miRNA:   3'- gGGUGGUGGuaGg-GGGC---------------UCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 81781 0.81 0.172565
Target:  5'- gCCuCCGCCc-CCCCCGAGGGGUGGCg -3'
miRNA:   3'- gGGuGGUGGuaGGGGGCUCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 83763 0.67 0.840615
Target:  5'- cCCCGCCGCCAgcaacagaagCgCCGGGGGGcccgGACg -3'
miRNA:   3'- -GGGUGGUGGUag--------GgGGCUCUCUa---CUG- -5'
5128 5' -57.2 NC_001798.1 + 85441 0.68 0.79842
Target:  5'- gCCUACCGCCucUCgCCCC-AGuGGGUGGCc -3'
miRNA:   3'- -GGGUGGUGGu-AG-GGGGcUC-UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 86888 0.66 0.891848
Target:  5'- uUCCGCCGCCGggaaCCCCGgcguGGAGcgccgGGCc -3'
miRNA:   3'- -GGGUGGUGGUag--GGGGC----UCUCua---CUG- -5'
5128 5' -57.2 NC_001798.1 + 90628 0.66 0.878245
Target:  5'- cUCCACCACC-UCCgCCuCGAagugguccgcgGAGAUGcCg -3'
miRNA:   3'- -GGGUGGUGGuAGG-GG-GCU-----------CUCUACuG- -5'
5128 5' -57.2 NC_001798.1 + 90698 0.67 0.824236
Target:  5'- gCCGCCGCCAggCgCUCGcAGAGAUcGCg -3'
miRNA:   3'- gGGUGGUGGUa-GgGGGC-UCUCUAcUG- -5'
5128 5' -57.2 NC_001798.1 + 91336 0.74 0.432253
Target:  5'- gCCCgaGCCGCCGgcuucCCCCCGGGGGAagccgGGCc -3'
miRNA:   3'- -GGG--UGGUGGUa----GGGGGCUCUCUa----CUG- -5'
5128 5' -57.2 NC_001798.1 + 91447 0.67 0.81579
Target:  5'- cCCCcCCACCcgCCCaCCcaacagcucgggGuGGGAUGGCg -3'
miRNA:   3'- -GGGuGGUGGuaGGG-GG------------CuCUCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.