miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5128 5' -57.2 NC_001798.1 + 28969 0.66 0.871122
Target:  5'- cCCCGCCgcuccGCCcgCCCCa-GGGGgcGGCg -3'
miRNA:   3'- -GGGUGG-----UGGuaGGGGgcUCUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 30254 0.69 0.71404
Target:  5'- gCCCGCCGCCccgcaCgCCUGGGGGAUG-Cu -3'
miRNA:   3'- -GGGUGGUGGua---GgGGGCUCUCUACuG- -5'
5128 5' -57.2 NC_001798.1 + 31629 0.7 0.654347
Target:  5'- gCCGCCGCCG-CCCCCGu--GGUGuCu -3'
miRNA:   3'- gGGUGGUGGUaGGGGGCucuCUACuG- -5'
5128 5' -57.2 NC_001798.1 + 31945 0.66 0.866749
Target:  5'- cUCCGCCGCCccgcgcucgccccucGcCCCCCaGGGGGUGGg -3'
miRNA:   3'- -GGGUGGUGG---------------UaGGGGGcUCUCUACUg -5'
5128 5' -57.2 NC_001798.1 + 34134 0.68 0.807181
Target:  5'- aCCCG-CGCCugccCCCCCGGGAacGAcGACg -3'
miRNA:   3'- -GGGUgGUGGua--GGGGGCUCU--CUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 34555 0.66 0.885155
Target:  5'- cCCCGgaGCCuggGUCCCCCGGcGGAcGGCu -3'
miRNA:   3'- -GGGUggUGG---UAGGGGGCUcUCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 35205 0.7 0.693329
Target:  5'- cCCCugcguucguuGCUGCCGcgCCCCCGguuuuauaaagacAGGGAUGACg -3'
miRNA:   3'- -GGG----------UGGUGGUa-GGGGGC-------------UCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 36003 0.68 0.793092
Target:  5'- uUCACCACCAcgCCCCCcaccGcgccuuggcuguuugGGGGGUGGCg -3'
miRNA:   3'- gGGUGGUGGUa-GGGGG----C---------------UCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 36128 0.67 0.824236
Target:  5'- uCUCGCCGCgAUCCCgCCGGuGGGGcgcGGCg -3'
miRNA:   3'- -GGGUGGUGgUAGGG-GGCU-CUCUa--CUG- -5'
5128 5' -57.2 NC_001798.1 + 38708 0.67 0.824236
Target:  5'- aCCCGCCAUgCAggCCCCCGGGAu----- -3'
miRNA:   3'- -GGGUGGUG-GUa-GGGGGCUCUcuacug -5'
5128 5' -57.2 NC_001798.1 + 43540 0.72 0.56412
Target:  5'- uCCCGCCaggGCgGUUUCCCuGGGGGUGACg -3'
miRNA:   3'- -GGGUGG---UGgUAGGGGGcUCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 43878 0.67 0.81579
Target:  5'- aCCCAgCgGCCGcggCCCCgCGGGAGuacUGGCu -3'
miRNA:   3'- -GGGU-GgUGGUa--GGGG-GCUCUCu--ACUG- -5'
5128 5' -57.2 NC_001798.1 + 45121 0.69 0.723803
Target:  5'- aCCaCGCCugCAUggucaaCCUCGAGAGGcUGGCg -3'
miRNA:   3'- -GG-GUGGugGUAg-----GGGGCUCUCU-ACUG- -5'
5128 5' -57.2 NC_001798.1 + 48432 0.68 0.762002
Target:  5'- cCCCGCCGCC--CCCUCGAGuagcGACc -3'
miRNA:   3'- -GGGUGGUGGuaGGGGGCUCucuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 51409 0.71 0.631203
Target:  5'- cCCCGCCGCCGUCgcgcacgaugacggCCCCGGGGcgcGGCc -3'
miRNA:   3'- -GGGUGGUGGUAG--------------GGGGCUCUcuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 53335 0.68 0.789513
Target:  5'- aCCAUaaCACCGUCCCC-GAGAGccUGAUc -3'
miRNA:   3'- gGGUG--GUGGUAGGGGgCUCUCu-ACUG- -5'
5128 5' -57.2 NC_001798.1 + 54221 0.66 0.878245
Target:  5'- aCCGCCGCCccccuGUUCCCCac--GAUGACc -3'
miRNA:   3'- gGGUGGUGG-----UAGGGGGcucuCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 54451 0.66 0.863793
Target:  5'- aCCC-CCGCCGcUCCCCCGGGc------ -3'
miRNA:   3'- -GGGuGGUGGU-AGGGGGCUCucuacug -5'
5128 5' -57.2 NC_001798.1 + 57903 0.67 0.84775
Target:  5'- cCCCGCCcCCAuuuccuuccccccUCCCCCcGGGGAUcGGa -3'
miRNA:   3'- -GGGUGGuGGU-------------AGGGGGcUCUCUA-CUg -5'
5128 5' -57.2 NC_001798.1 + 58330 0.69 0.733489
Target:  5'- gCCCGCCGCCGcguggCCCCCGAcaaacaccuGGGGccACa -3'
miRNA:   3'- -GGGUGGUGGUa----GGGGGCU---------CUCUacUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.