miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5128 5' -57.2 NC_001798.1 + 51409 0.71 0.631203
Target:  5'- cCCCGCCGCCGUCgcgcacgaugacggCCCCGGGGcgcGGCc -3'
miRNA:   3'- -GGGUGGUGGUAG--------------GGGGCUCUcuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 126332 0.7 0.64429
Target:  5'- uCCCGCCGCCgAUCCagcuuCCGGGAGc-GGCu -3'
miRNA:   3'- -GGGUGGUGG-UAGGg----GGCUCUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 103364 0.7 0.64429
Target:  5'- cCCCACaaaaaACgG-CCCCCGAGGGucguUGACc -3'
miRNA:   3'- -GGGUGg----UGgUaGGGGGCUCUCu---ACUG- -5'
5128 5' -57.2 NC_001798.1 + 27913 0.7 0.64429
Target:  5'- uCCCGCCGCCGgggUCCCCGccgccGGGGUcccGGCg -3'
miRNA:   3'- -GGGUGGUGGUa--GGGGGCu----CUCUA---CUG- -5'
5128 5' -57.2 NC_001798.1 + 31629 0.7 0.654347
Target:  5'- gCCGCCGCCG-CCCCCGu--GGUGuCu -3'
miRNA:   3'- gGGUGGUGGUaGGGGGCucuCUACuG- -5'
5128 5' -57.2 NC_001798.1 + 142020 0.7 0.664386
Target:  5'- uCCCACCGCa----CCCGGGccGGGUGACa -3'
miRNA:   3'- -GGGUGGUGguaggGGGCUC--UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 35205 0.7 0.693329
Target:  5'- cCCCugcguucguuGCUGCCGcgCCCCCGguuuuauaaagacAGGGAUGACg -3'
miRNA:   3'- -GGG----------UGGUGGUa-GGGGGC-------------UCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 100173 0.7 0.694321
Target:  5'- cUCCGCCACCGUCggCCGGcGGGUGAg -3'
miRNA:   3'- -GGGUGGUGGUAGggGGCUcUCUACUg -5'
5128 5' -57.2 NC_001798.1 + 124034 0.69 0.700261
Target:  5'- gCCCGCCauuuaggauggcuGCUAUccaggauuaccgacCCCCCGGGAGGaGGCg -3'
miRNA:   3'- -GGGUGG-------------UGGUA--------------GGGGGCUCUCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 111573 0.69 0.70421
Target:  5'- aCCCACCACagcUCCCUGAGcGGggGGCc -3'
miRNA:   3'- -GGGUGGUGguaGGGGGCUC-UCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 131259 0.69 0.70421
Target:  5'- gCCAgCACCAggagCCCCaCGAcGcAGAUGGCc -3'
miRNA:   3'- gGGUgGUGGUa---GGGG-GCU-C-UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 145770 0.69 0.70815
Target:  5'- cCCCGCCGCCca-CCCCGGGGuccacacaggagcgcGcgGGCg -3'
miRNA:   3'- -GGGUGGUGGuagGGGGCUCU---------------CuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 30254 0.69 0.71404
Target:  5'- gCCCGCCGCCccgcaCgCCUGGGGGAUG-Cu -3'
miRNA:   3'- -GGGUGGUGGua---GgGGGCUCUCUACuG- -5'
5128 5' -57.2 NC_001798.1 + 153057 0.69 0.71404
Target:  5'- gCCGgCGCCG-CCCCCuGGGGcgGGCg -3'
miRNA:   3'- gGGUgGUGGUaGGGGGcUCUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 45121 0.69 0.723803
Target:  5'- aCCaCGCCugCAUggucaaCCUCGAGAGGcUGGCg -3'
miRNA:   3'- -GG-GUGGugGUAg-----GGGGCUCUCU-ACUG- -5'
5128 5' -57.2 NC_001798.1 + 11065 0.69 0.723803
Target:  5'- aCCCGCCucCCAUgCCaUCCGGGGaAUGACg -3'
miRNA:   3'- -GGGUGGu-GGUA-GG-GGGCUCUcUACUG- -5'
5128 5' -57.2 NC_001798.1 + 58330 0.69 0.733489
Target:  5'- gCCCGCCGCCGcguggCCCCCGAcaaacaccuGGGGccACa -3'
miRNA:   3'- -GGGUGGUGGUa----GGGGGCU---------CUCUacUG- -5'
5128 5' -57.2 NC_001798.1 + 104299 0.69 0.74309
Target:  5'- gCCCGaguCCAauCCGgacgcCCCCCGAGcGAUGGCc -3'
miRNA:   3'- -GGGU---GGU--GGUa----GGGGGCUCuCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 137259 0.69 0.746905
Target:  5'- cUCCGCCACCucgaccagacugcgGUCCCCggcgauggccuguuUGAG-GAUGGCg -3'
miRNA:   3'- -GGGUGGUGG--------------UAGGGG--------------GCUCuCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 123387 0.69 0.752598
Target:  5'- cCCCAggcgaCGCCAggcCCCCCGGGAGccgcGGCc -3'
miRNA:   3'- -GGGUg----GUGGUa--GGGGGCUCUCua--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.