miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5128 5' -57.2 NC_001798.1 + 136388 1.12 0.001663
Target:  5'- gCCCACCACCAUCCCCCGAGAGAUGACa -3'
miRNA:   3'- -GGGUGGUGGUAGGGGGCUCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 105456 0.88 0.06476
Target:  5'- cUCCGCCGCCGUCUCCCGGGGGAUGu- -3'
miRNA:   3'- -GGGUGGUGGUAGGGGGCUCUCUACug -5'
5128 5' -57.2 NC_001798.1 + 81781 0.81 0.172565
Target:  5'- gCCuCCGCCc-CCCCCGAGGGGUGGCg -3'
miRNA:   3'- gGGuGGUGGuaGGGGGCUCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 79980 0.76 0.357565
Target:  5'- gUCCGCCGCCGggCCCCCGGGGGucccaGCg -3'
miRNA:   3'- -GGGUGGUGGUa-GGGGGCUCUCuac--UG- -5'
5128 5' -57.2 NC_001798.1 + 108496 0.75 0.414873
Target:  5'- gCCCACgucCCGUCCCCCcgccGAGGUGACc -3'
miRNA:   3'- -GGGUGgu-GGUAGGGGGcu--CUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 91336 0.74 0.432253
Target:  5'- gCCCgaGCCGCCGgcuucCCCCCGGGGGAagccgGGCc -3'
miRNA:   3'- -GGG--UGGUGGUa----GGGGGCUCUCUa----CUG- -5'
5128 5' -57.2 NC_001798.1 + 137135 0.74 0.45005
Target:  5'- aCCGCaACCG-CCCCCuGGGGGUGACg -3'
miRNA:   3'- gGGUGgUGGUaGGGGGcUCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 109669 0.73 0.496218
Target:  5'- gCCACgGCCGUCCUCCGGGcgccguuccuGGcgGGCg -3'
miRNA:   3'- gGGUGgUGGUAGGGGGCUC----------UCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 27668 0.73 0.505711
Target:  5'- cCCCAaaaaaCACCc-CCCCCGGGGGuUGACu -3'
miRNA:   3'- -GGGUg----GUGGuaGGGGGCUCUCuACUG- -5'
5128 5' -57.2 NC_001798.1 + 122456 0.73 0.515281
Target:  5'- cCCCACCAgCUGUCCCCCGcGGcccAGAcGGCg -3'
miRNA:   3'- -GGGUGGU-GGUAGGGGGC-UC---UCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 110492 0.72 0.56412
Target:  5'- gCCCAUCGCCAccaucgCCCCCGGGuuucUGGCc -3'
miRNA:   3'- -GGGUGGUGGUa-----GGGGGCUCucu-ACUG- -5'
5128 5' -57.2 NC_001798.1 + 43540 0.72 0.56412
Target:  5'- uCCCGCCaggGCgGUUUCCCuGGGGGUGACg -3'
miRNA:   3'- -GGGUGG---UGgUAGGGGGcUCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 114114 0.72 0.574048
Target:  5'- gCCCACCGgcuCCAUCCUgaguaCGAucGAGGUGGCg -3'
miRNA:   3'- -GGGUGGU---GGUAGGGg----GCU--CUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 142049 0.72 0.584016
Target:  5'- aCCC-CCACC--CCCCCGAGAcAUGGg -3'
miRNA:   3'- -GGGuGGUGGuaGGGGGCUCUcUACUg -5'
5128 5' -57.2 NC_001798.1 + 9029 0.72 0.588013
Target:  5'- aCCCACCGCC--CCCCgcagccagcgcacggCGAGccAGGUGACg -3'
miRNA:   3'- -GGGUGGUGGuaGGGG---------------GCUC--UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 126405 0.71 0.594017
Target:  5'- gUCGCCGCuCGUCCCCCGAGGcccccGGCc -3'
miRNA:   3'- gGGUGGUG-GUAGGGGGCUCUcua--CUG- -5'
5128 5' -57.2 NC_001798.1 + 7062 0.71 0.604046
Target:  5'- gCCCACCcCCAaaCCCCGguuGGGGcgGGCa -3'
miRNA:   3'- -GGGUGGuGGUagGGGGC---UCUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 122388 0.71 0.614094
Target:  5'- cCCCGCgGCUGUCCUCCGAGc--UGGCc -3'
miRNA:   3'- -GGGUGgUGGUAGGGGGCUCucuACUG- -5'
5128 5' -57.2 NC_001798.1 + 148493 0.71 0.614094
Target:  5'- uCCUcCCACCcgUCCCCGGGGGcagagGGCg -3'
miRNA:   3'- -GGGuGGUGGuaGGGGGCUCUCua---CUG- -5'
5128 5' -57.2 NC_001798.1 + 81253 0.71 0.618118
Target:  5'- aCCGCCGCCcgCgaCCCGcgggaccuugcggggGGGGAUGGCg -3'
miRNA:   3'- gGGUGGUGGuaGg-GGGC---------------UCUCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.