miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5128 5' -57.2 NC_001798.1 + 134919 0.68 0.780468
Target:  5'- gCCGCCGCCG-CCgCCGAGucggcgcGUGACc -3'
miRNA:   3'- gGGUGGUGGUaGGgGGCUCuc-----UACUG- -5'
5128 5' -57.2 NC_001798.1 + 134196 0.68 0.758253
Target:  5'- cCCgGCCGCCuccccgcuggagCCCCUGGGGGAcccgacccugUGGCg -3'
miRNA:   3'- -GGgUGGUGGua----------GGGGGCUCUCU----------ACUG- -5'
5128 5' -57.2 NC_001798.1 + 131385 0.66 0.863793
Target:  5'- cCCCugggggcCCGgCGUCCCaUCG-GGGAUGACg -3'
miRNA:   3'- -GGGu------GGUgGUAGGG-GGCuCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 131329 0.67 0.848533
Target:  5'- aCCaCGCCGCCcgCgCCCCGGGcgc-GACg -3'
miRNA:   3'- -GG-GUGGUGGuaG-GGGGCUCucuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 131259 0.69 0.70421
Target:  5'- gCCAgCACCAggagCCCCaCGAcGcAGAUGGCc -3'
miRNA:   3'- gGGUgGUGGUa---GGGG-GCU-C-UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 126405 0.71 0.594017
Target:  5'- gUCGCCGCuCGUCCCCCGAGGcccccGGCc -3'
miRNA:   3'- gGGUGGUG-GUAGGGGGCUCUcua--CUG- -5'
5128 5' -57.2 NC_001798.1 + 126332 0.7 0.64429
Target:  5'- uCCCGCCGCCgAUCCagcuuCCGGGAGc-GGCu -3'
miRNA:   3'- -GGGUGGUGG-UAGGg----GGCUCUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 124034 0.69 0.700261
Target:  5'- gCCCGCCauuuaggauggcuGCUAUccaggauuaccgacCCCCCGGGAGGaGGCg -3'
miRNA:   3'- -GGGUGG-------------UGGUA--------------GGGGGCUCUCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 123387 0.69 0.752598
Target:  5'- cCCCAggcgaCGCCAggcCCCCCGGGAGccgcGGCc -3'
miRNA:   3'- -GGGUg----GUGGUa--GGGGGCUCUCua--CUG- -5'
5128 5' -57.2 NC_001798.1 + 122456 0.73 0.515281
Target:  5'- cCCCACCAgCUGUCCCCCGcGGcccAGAcGGCg -3'
miRNA:   3'- -GGGUGGU-GGUAGGGGGC-UC---UCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 122388 0.71 0.614094
Target:  5'- cCCCGCgGCUGUCCUCCGAGc--UGGCc -3'
miRNA:   3'- -GGGUGgUGGUAGGGGGCUCucuACUG- -5'
5128 5' -57.2 NC_001798.1 + 121453 0.68 0.762002
Target:  5'- uCCUGCCGCgCGUCCCCagCGcGGGcgGGCu -3'
miRNA:   3'- -GGGUGGUG-GUAGGGG--GCuCUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 119491 0.66 0.856261
Target:  5'- cCCCGguuauCCGCUA-CCCCUGAGGcGggGGCa -3'
miRNA:   3'- -GGGU-----GGUGGUaGGGGGCUCU-CuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 114114 0.72 0.574048
Target:  5'- gCCCACCGgcuCCAUCCUgaguaCGAucGAGGUGGCg -3'
miRNA:   3'- -GGGUGGU---GGUAGGGg----GCU--CUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 112754 0.66 0.878245
Target:  5'- aCCGCCACguCAUCagCCCGcggGGAGGgcgGACg -3'
miRNA:   3'- gGGUGGUG--GUAGg-GGGC---UCUCUa--CUG- -5'
5128 5' -57.2 NC_001798.1 + 111573 0.69 0.70421
Target:  5'- aCCCACCACagcUCCCUGAGcGGggGGCc -3'
miRNA:   3'- -GGGUGGUGguaGGGGGCUC-UCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 110492 0.72 0.56412
Target:  5'- gCCCAUCGCCAccaucgCCCCCGGGuuucUGGCc -3'
miRNA:   3'- -GGGUGGUGGUa-----GGGGGCUCucu-ACUG- -5'
5128 5' -57.2 NC_001798.1 + 109878 0.66 0.856261
Target:  5'- uCCCugCGCUucgAUCUCgCCGAGGGcgGGu -3'
miRNA:   3'- -GGGugGUGG---UAGGG-GGCUCUCuaCUg -5'
5128 5' -57.2 NC_001798.1 + 109669 0.73 0.496218
Target:  5'- gCCACgGCCGUCCUCCGGGcgccguuccuGGcgGGCg -3'
miRNA:   3'- gGGUGgUGGUAGGGGGCUC----------UCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 108496 0.75 0.414873
Target:  5'- gCCCACgucCCGUCCCCCcgccGAGGUGACc -3'
miRNA:   3'- -GGGUGgu-GGUAGGGGGcu--CUCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.