miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5128 5' -57.2 NC_001798.1 + 154338 0.68 0.79842
Target:  5'- uCCCGCCccGCCucuuuUCCCCCGGG-GAg--- -3'
miRNA:   3'- -GGGUGG--UGGu----AGGGGGCUCuCUacug -5'
5128 5' -57.2 NC_001798.1 + 153446 0.66 0.871122
Target:  5'- gCgCGCgGCCGUCUCCCaGGccaccAGAUGGCg -3'
miRNA:   3'- -GgGUGgUGGUAGGGGGcUC-----UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 153057 0.69 0.71404
Target:  5'- gCCGgCGCCG-CCCCCuGGGGcgGGCg -3'
miRNA:   3'- gGGUgGUGGUaGGGGGcUCUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 150155 0.67 0.81579
Target:  5'- aCCCGC-GCC-UCUUCCGGGGGcgGGCc -3'
miRNA:   3'- -GGGUGgUGGuAGGGGGCUCUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 149141 0.68 0.762002
Target:  5'- cCCCACCuCCcccugCCCCCGAGGcgccucggccGGUGGu -3'
miRNA:   3'- -GGGUGGuGGua---GGGGGCUCU----------CUACUg -5'
5128 5' -57.2 NC_001798.1 + 148493 0.71 0.614094
Target:  5'- uCCUcCCACCcgUCCCCGGGGGcagagGGCg -3'
miRNA:   3'- -GGGuGGUGGuaGGGGGCUCUCua---CUG- -5'
5128 5' -57.2 NC_001798.1 + 147470 0.68 0.780468
Target:  5'- gCCGCgugaGCCGUCCgCCGGGGGAcccaGGCu -3'
miRNA:   3'- gGGUGg---UGGUAGGgGGCUCUCUa---CUG- -5'
5128 5' -57.2 NC_001798.1 + 146857 0.66 0.871122
Target:  5'- gCCCGCCGCCGa---UCGAGAGG-GACu -3'
miRNA:   3'- -GGGUGGUGGUagggGGCUCUCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 146622 0.66 0.871122
Target:  5'- uCCCGCCGCauuaggCCCCCGcGGGcAUccGGCg -3'
miRNA:   3'- -GGGUGGUGgua---GGGGGCuCUC-UA--CUG- -5'
5128 5' -57.2 NC_001798.1 + 146008 0.66 0.887858
Target:  5'- aCCGCCGCCAcCCCCCaaacagccaaggcgcGGuGGggGGCg -3'
miRNA:   3'- gGGUGGUGGUaGGGGG---------------CUcUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 145898 0.68 0.789513
Target:  5'- aCCGCCGCCGcgcCCCaCCGGcGGGAUcGCg -3'
miRNA:   3'- gGGUGGUGGUa--GGG-GGCU-CUCUAcUG- -5'
5128 5' -57.2 NC_001798.1 + 145770 0.69 0.70815
Target:  5'- cCCCGCCGCCca-CCCCGGGGuccacacaggagcgcGcgGGCg -3'
miRNA:   3'- -GGGUGGUGGuagGGGGCUCU---------------CuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 145628 0.66 0.863793
Target:  5'- cCCCACCGCC--CCgCCCGgcAGGGG-GGCc -3'
miRNA:   3'- -GGGUGGUGGuaGG-GGGC--UCUCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 142049 0.72 0.584016
Target:  5'- aCCC-CCACC--CCCCCGAGAcAUGGg -3'
miRNA:   3'- -GGGuGGUGGuaGGGGGCUCUcUACUg -5'
5128 5' -57.2 NC_001798.1 + 142020 0.7 0.664386
Target:  5'- uCCCACCGCa----CCCGGGccGGGUGACa -3'
miRNA:   3'- -GGGUGGUGguaggGGGCUC--UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 137259 0.69 0.746905
Target:  5'- cUCCGCCACCucgaccagacugcgGUCCCCggcgauggccuguuUGAG-GAUGGCg -3'
miRNA:   3'- -GGGUGGUGG--------------UAGGGG--------------GCUCuCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 137135 0.74 0.45005
Target:  5'- aCCGCaACCG-CCCCCuGGGGGUGACg -3'
miRNA:   3'- gGGUGgUGGUaGGGGGcUCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 136388 1.12 0.001663
Target:  5'- gCCCACCACCAUCCCCCGAGAGAUGACa -3'
miRNA:   3'- -GGGUGGUGGUAGGGGGCUCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 135775 0.68 0.789513
Target:  5'- gCCgGCCGCCggCCCgCCG-GAGGaGGCc -3'
miRNA:   3'- -GGgUGGUGGuaGGG-GGCuCUCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 135114 0.66 0.884473
Target:  5'- gCCACCACCAUccaacuacucgacCCCCCGGcGGccgucgGGCc -3'
miRNA:   3'- gGGUGGUGGUA-------------GGGGGCUcUCua----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.