miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5129 5' -56.1 NC_001798.1 + 121685 0.66 0.913103
Target:  5'- -cGUCGCGCGGCUgggggccGCGGCUcccgccGCcgCGa -3'
miRNA:   3'- gaCGGCGCGCCGA-------UGCUGA------UGaaGCa -5'
5129 5' -56.1 NC_001798.1 + 3304 0.66 0.900839
Target:  5'- -cGCCGCcgacggcaacgggGCGGCggcgGCGGCggGCUUCc- -3'
miRNA:   3'- gaCGGCG-------------CGCCGa---UGCUGa-UGAAGca -5'
5129 5' -56.1 NC_001798.1 + 128587 0.66 0.89036
Target:  5'- -gGCCGCGCGGacgcgggcgucaacgACGACgccgacgccgggcGCUUCGUc -3'
miRNA:   3'- gaCGGCGCGCCga-------------UGCUGa------------UGAAGCA- -5'
5129 5' -56.1 NC_001798.1 + 26089 0.67 0.881419
Target:  5'- uCUGCCGCGgGGCcaacgUGCGG-UACcgCGUg -3'
miRNA:   3'- -GACGGCGCgCCG-----AUGCUgAUGaaGCA- -5'
5129 5' -56.1 NC_001798.1 + 24618 0.67 0.874287
Target:  5'- cCUGCCGCGggauccuggaGGCgcugGCGGaggGCUUCGa -3'
miRNA:   3'- -GACGGCGCg---------CCGa---UGCUga-UGAAGCa -5'
5129 5' -56.1 NC_001798.1 + 35586 0.67 0.85938
Target:  5'- -cGCUGCuCGGCUGCGGCcgcggGCUcCGg -3'
miRNA:   3'- gaCGGCGcGCCGAUGCUGa----UGAaGCa -5'
5129 5' -56.1 NC_001798.1 + 27480 0.67 0.85938
Target:  5'- cCUGCCGCGCGGggGCGGgcGCg---- -3'
miRNA:   3'- -GACGGCGCGCCgaUGCUgaUGaagca -5'
5129 5' -56.1 NC_001798.1 + 5994 0.67 0.851616
Target:  5'- -gGCUGCGCGGCggagaccgggACGGCaGCggCGg -3'
miRNA:   3'- gaCGGCGCGCCGa---------UGCUGaUGaaGCa -5'
5129 5' -56.1 NC_001798.1 + 26499 0.67 0.843655
Target:  5'- -gGCCGCGCGGggACGG-UGCUggccgCGg -3'
miRNA:   3'- gaCGGCGCGCCgaUGCUgAUGAa----GCa -5'
5129 5' -56.1 NC_001798.1 + 116034 0.67 0.843655
Target:  5'- -cGCgaUGCGCGGCguucgugaACGACUACUcgcuggucUCGUa -3'
miRNA:   3'- gaCG--GCGCGCCGa-------UGCUGAUGA--------AGCA- -5'
5129 5' -56.1 NC_001798.1 + 112206 0.68 0.835502
Target:  5'- -gGCCGCGCuGGCgga-GCUcGCUUCGUa -3'
miRNA:   3'- gaCGGCGCG-CCGaugcUGA-UGAAGCA- -5'
5129 5' -56.1 NC_001798.1 + 98386 0.68 0.835502
Target:  5'- -cGUCGagaGCGGCcccgACGGCUGCaUCGg -3'
miRNA:   3'- gaCGGCg--CGCCGa---UGCUGAUGaAGCa -5'
5129 5' -56.1 NC_001798.1 + 2570 0.68 0.832189
Target:  5'- -gGCCGCGgGGCggggggcguccgcGCGGCUcuuCUUCGg -3'
miRNA:   3'- gaCGGCGCgCCGa------------UGCUGAu--GAAGCa -5'
5129 5' -56.1 NC_001798.1 + 39845 0.68 0.792126
Target:  5'- -cGCCGCGCugccgGGCgagGCGuCgagGCUUCGg -3'
miRNA:   3'- gaCGGCGCG-----CCGa--UGCuGa--UGAAGCa -5'
5129 5' -56.1 NC_001798.1 + 113645 0.69 0.773711
Target:  5'- -cGCCGCcaugugggugGCGGCgGCGgACUGCUUUGc -3'
miRNA:   3'- gaCGGCG----------CGCCGaUGC-UGAUGAAGCa -5'
5129 5' -56.1 NC_001798.1 + 24763 0.69 0.773711
Target:  5'- cCUGCgCGCcUGGCUGCGcgaGCUGCggUUCGUg -3'
miRNA:   3'- -GACG-GCGcGCCGAUGC---UGAUG--AAGCA- -5'
5129 5' -56.1 NC_001798.1 + 22286 0.69 0.745165
Target:  5'- aUGCCGCGCGGgCggaGCGGCgGCggCGc -3'
miRNA:   3'- gACGGCGCGCC-Ga--UGCUGaUGaaGCa -5'
5129 5' -56.1 NC_001798.1 + 85259 0.69 0.745165
Target:  5'- -gGCCGCGCggGGCcGCGcGCgagGCUUCGg -3'
miRNA:   3'- gaCGGCGCG--CCGaUGC-UGa--UGAAGCa -5'
5129 5' -56.1 NC_001798.1 + 100449 0.69 0.745165
Target:  5'- -cGgCG-GgGGCUACGugUACUUCGa -3'
miRNA:   3'- gaCgGCgCgCCGAUGCugAUGAAGCa -5'
5129 5' -56.1 NC_001798.1 + 28672 0.7 0.735441
Target:  5'- -cGCCGCGUGGCgGCGGCcgagGCggucaUCGg -3'
miRNA:   3'- gaCGGCGCGCCGaUGCUGa---UGa----AGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.