miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 5' -53.2 NC_001798.1 + 134577 1.13 0.002884
Target:  5'- cGAAUACACCACCCUGGCGUUUCCGCCg -3'
miRNA:   3'- -CUUAUGUGGUGGGACCGCAAAGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 7863 0.76 0.543095
Target:  5'- gGAGUccuCGCCgcugugGCCCUGGCGgacggCCGCCa -3'
miRNA:   3'- -CUUAu--GUGG------UGGGACCGCaaa--GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 121355 0.74 0.656752
Target:  5'- cGGcgACugCACCCcgUGGCGUUcggcguuugCCGCCu -3'
miRNA:   3'- -CUuaUGugGUGGG--ACCGCAAa--------GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 15549 0.74 0.667126
Target:  5'- -uGUGCcCgGCCCcgGGCGUUgCCGCCg -3'
miRNA:   3'- cuUAUGuGgUGGGa-CCGCAAaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 11837 0.73 0.691888
Target:  5'- aGAGaGCGCCACCCccaaaacaaaccggcUGGCGUUcgucgcgCUGCCg -3'
miRNA:   3'- -CUUaUGUGGUGGG---------------ACCGCAAa------GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 37160 0.73 0.718374
Target:  5'- ---cGCGCCGCgccgCCUGGCGgg-CCGCUc -3'
miRNA:   3'- cuuaUGUGGUG----GGACCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 147254 0.73 0.718374
Target:  5'- ---cGgGCCGCgCCggcGGCGUUUCCGCg -3'
miRNA:   3'- cuuaUgUGGUG-GGa--CCGCAAAGGCGg -5'
5130 5' -53.2 NC_001798.1 + 32074 0.73 0.718374
Target:  5'- ---cGCGCC-CCCgucGGCGUcUCCGUCg -3'
miRNA:   3'- cuuaUGUGGuGGGa--CCGCAaAGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 31208 0.73 0.728432
Target:  5'- ---gGCGCC-CCCUGGCGcc-CCGCg -3'
miRNA:   3'- cuuaUGUGGuGGGACCGCaaaGGCGg -5'
5130 5' -53.2 NC_001798.1 + 69713 0.72 0.748282
Target:  5'- ---cACACgCACCCUcacgggcgaaGGCGgcUUCCGCCu -3'
miRNA:   3'- cuuaUGUG-GUGGGA----------CCGCa-AAGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 37290 0.72 0.752204
Target:  5'- ---gGC-CCACCCUGGCGUgggaggcgaccucCCGUCg -3'
miRNA:   3'- cuuaUGuGGUGGGACCGCAaa-----------GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 20284 0.72 0.758053
Target:  5'- -cGUGCGCgGCCCcaGGCGggUCCGgCa -3'
miRNA:   3'- cuUAUGUGgUGGGa-CCGCaaAGGCgG- -5'
5130 5' -53.2 NC_001798.1 + 48370 0.72 0.758053
Target:  5'- ---gGgGCCGCCCcgcggGGCGUg-CCGCCg -3'
miRNA:   3'- cuuaUgUGGUGGGa----CCGCAaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 70282 0.72 0.758053
Target:  5'- ---cACGCCGCCaCggcGGCGUUUCUGUUg -3'
miRNA:   3'- cuuaUGUGGUGG-Ga--CCGCAAAGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 116232 0.72 0.758053
Target:  5'- uGAUGCGCgACCC-GGCGcugCUGCCg -3'
miRNA:   3'- cUUAUGUGgUGGGaCCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 25440 0.72 0.777241
Target:  5'- --cUGCGCCGCCCcgccccccGGCGgcgcgcCCGCCg -3'
miRNA:   3'- cuuAUGUGGUGGGa-------CCGCaaa---GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 82955 0.72 0.777241
Target:  5'- ---aGCACCggucguagcGCCCUGGCGguuuugaUCCGCg -3'
miRNA:   3'- cuuaUGUGG---------UGGGACCGCaa-----AGGCGg -5'
5130 5' -53.2 NC_001798.1 + 40816 0.71 0.795891
Target:  5'- ---aGCGCC-CCCUGGgGg--CCGCUg -3'
miRNA:   3'- cuuaUGUGGuGGGACCgCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 77386 0.71 0.795891
Target:  5'- cGAGcuCACgACCCUGGgGUcggcggCCGCCg -3'
miRNA:   3'- -CUUauGUGgUGGGACCgCAaa----GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 52447 0.71 0.813929
Target:  5'- ---cACACgGCCCUGGCGa--CCGUUa -3'
miRNA:   3'- cuuaUGUGgUGGGACCGCaaaGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.