miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 5' -53.2 NC_001798.1 + 2004 0.66 0.967013
Target:  5'- --uUGC-CCGCCCaGGCGg--CCGUg -3'
miRNA:   3'- cuuAUGuGGUGGGaCCGCaaaGGCGg -5'
5130 5' -53.2 NC_001798.1 + 2618 0.7 0.839686
Target:  5'- ---gGCGCCGCCC-GGCGgcgCCcugGCCg -3'
miRNA:   3'- cuuaUGUGGUGGGaCCGCaaaGG---CGG- -5'
5130 5' -53.2 NC_001798.1 + 5163 0.67 0.948261
Target:  5'- ---cGCGCCgaucggguagAUCCUGGCGg--CCGCg -3'
miRNA:   3'- cuuaUGUGG----------UGGGACCGCaaaGGCGg -5'
5130 5' -53.2 NC_001798.1 + 7681 0.68 0.939104
Target:  5'- ---aACGCCcagGCCCUGGCGcacCUGCa -3'
miRNA:   3'- cuuaUGUGG---UGGGACCGCaaaGGCGg -5'
5130 5' -53.2 NC_001798.1 + 7863 0.76 0.543095
Target:  5'- gGAGUccuCGCCgcugugGCCCUGGCGgacggCCGCCa -3'
miRNA:   3'- -CUUAu--GUGG------UGGGACCGCaaa--GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 9640 0.68 0.91784
Target:  5'- ---aGCACCGCCCcgaGGCGcagcgggCCGCg -3'
miRNA:   3'- cuuaUGUGGUGGGa--CCGCaaa----GGCGg -5'
5130 5' -53.2 NC_001798.1 + 10683 0.66 0.975618
Target:  5'- ---aGCGCCACCCacgacgGGCGcaggggaCCGCa -3'
miRNA:   3'- cuuaUGUGGUGGGa-----CCGCaaa----GGCGg -5'
5130 5' -53.2 NC_001798.1 + 11837 0.73 0.691888
Target:  5'- aGAGaGCGCCACCCccaaaacaaaccggcUGGCGUUcgucgcgCUGCCg -3'
miRNA:   3'- -CUUaUGUGGUGGG---------------ACCGCAAa------GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 15549 0.74 0.667126
Target:  5'- -uGUGCcCgGCCCcgGGCGUUgCCGCCg -3'
miRNA:   3'- cuUAUGuGgUGGGa-CCGCAAaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 16648 0.66 0.972956
Target:  5'- -----uGCCGCCC-GGCG--UCCGCg -3'
miRNA:   3'- cuuaugUGGUGGGaCCGCaaAGGCGg -5'
5130 5' -53.2 NC_001798.1 + 19099 0.66 0.975361
Target:  5'- cGAGUACGCacaaaaaACCCggcUGGgGUUUCgcuucauCGCCa -3'
miRNA:   3'- -CUUAUGUGg------UGGG---ACCgCAAAG-------GCGG- -5'
5130 5' -53.2 NC_001798.1 + 20284 0.72 0.758053
Target:  5'- -cGUGCGCgGCCCcaGGCGggUCCGgCa -3'
miRNA:   3'- cuUAUGUGgUGGGa-CCGCaaAGGCgG- -5'
5130 5' -53.2 NC_001798.1 + 22078 0.68 0.923527
Target:  5'- ---gGCcCCGCCCccuuuggGGCGgagCCGCCc -3'
miRNA:   3'- cuuaUGuGGUGGGa------CCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 23349 0.68 0.91784
Target:  5'- ---cGCGCCcCCCgccGGCGcucggCCGCCu -3'
miRNA:   3'- cuuaUGUGGuGGGa--CCGCaaa--GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 23480 0.7 0.847892
Target:  5'- cGAcgACGCCGCCC--GCGcccCCGCCa -3'
miRNA:   3'- -CUuaUGUGGUGGGacCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 24157 0.66 0.967013
Target:  5'- gGggUACGCCAUggcGGCGgg-CCGCUu -3'
miRNA:   3'- -CuuAUGUGGUGggaCCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 24205 0.67 0.943804
Target:  5'- ---gGCgGCCGCCgUGGCcaugagCCGCCg -3'
miRNA:   3'- cuuaUG-UGGUGGgACCGcaaa--GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 24470 0.69 0.884344
Target:  5'- gGggUGCucGCCGCCCUGGgGcgccugagcgCCGCg -3'
miRNA:   3'- -CuuAUG--UGGUGGGACCgCaaa-------GGCGg -5'
5130 5' -53.2 NC_001798.1 + 24711 0.7 0.855895
Target:  5'- ---cGCGCCcgggGCCCgcgGGCGcggCCGCCc -3'
miRNA:   3'- cuuaUGUGG----UGGGa--CCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 25089 0.66 0.972956
Target:  5'- ---gGCGCCGCCg-GGCGgcgccCCGCg -3'
miRNA:   3'- cuuaUGUGGUGGgaCCGCaaa--GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.