Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5131 | 3' | -57.9 | NC_001798.1 | + | 136127 | 0.66 | 0.849874 |
Target: 5'- gUUCUGGaagGCGUGuGGGGCgAGGG-CGGg -3' miRNA: 3'- gAGGACC---UGCAC-CUCCGgUUCCaGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 85808 | 0.66 | 0.849874 |
Target: 5'- cCUCCggGGGCGaugacggggGGGGGCgGGGG-CGGg -3' miRNA: 3'- -GAGGa-CCUGCa--------CCUCCGgUUCCaGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 58566 | 0.66 | 0.849874 |
Target: 5'- cCUCCgGGGCGUaucGGGGCgGGGGagacUCGAc -3' miRNA: 3'- -GAGGaCCUGCAc--CUCCGgUUCC----AGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 30919 | 0.66 | 0.83393 |
Target: 5'- -aCCUGGccgACGgugagGGcGGCgGGGGUCGGg -3' miRNA: 3'- gaGGACC---UGCa----CCuCCGgUUCCAGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 7797 | 0.66 | 0.83393 |
Target: 5'- --gCUGG-CG-GGA-GCCAGGGUCGGa -3' miRNA: 3'- gagGACCuGCaCCUcCGGUUCCAGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 104165 | 0.66 | 0.83393 |
Target: 5'- -gCCUGGGCGUccAGGCaCAGGG-CGGc -3' miRNA: 3'- gaGGACCUGCAccUCCG-GUUCCaGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 11641 | 0.66 | 0.83393 |
Target: 5'- ----cGGGCGUcccuguguccccGGGGGCgGGGGUCGGg -3' miRNA: 3'- gaggaCCUGCA------------CCUCCGgUUCCAGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 65229 | 0.66 | 0.825688 |
Target: 5'- --aCUGGAuCGcuUGGAGGCC-GGGUgGAc -3' miRNA: 3'- gagGACCU-GC--ACCUCCGGuUCCAgCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 4115 | 0.67 | 0.808701 |
Target: 5'- -cCCUGGGCG-GGcucGGCCGGGG-CGc -3' miRNA: 3'- gaGGACCUGCaCCu--CCGGUUCCaGCu -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 30152 | 0.67 | 0.791096 |
Target: 5'- ----cGGGCG-GGGGGCCGGGGU-GAg -3' miRNA: 3'- gaggaCCUGCaCCUCCGGUUCCAgCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 121552 | 0.67 | 0.782082 |
Target: 5'- -gCCUGG-CGUGG-GGCCcguGGG-CGAc -3' miRNA: 3'- gaGGACCuGCACCuCCGGu--UCCaGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 111179 | 0.68 | 0.725567 |
Target: 5'- gUCCuUGGGCG-GGAGG---AGGUCGAa -3' miRNA: 3'- gAGG-ACCUGCaCCUCCgguUCCAGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 90072 | 0.68 | 0.715824 |
Target: 5'- aCUCCaGGACGacGGGGGCCGgcaggccccuggAGG-CGAg -3' miRNA: 3'- -GAGGaCCUGCa-CCUCCGGU------------UCCaGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 85282 | 0.69 | 0.706013 |
Target: 5'- gCUUCggGGGgGcGGGGGCCGGGGUCc- -3' miRNA: 3'- -GAGGa-CCUgCaCCUCCGGUUCCAGcu -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 31974 | 0.69 | 0.706013 |
Target: 5'- -cCCaGGGgGUGGGGGCCAagAGGgCGGc -3' miRNA: 3'- gaGGaCCUgCACCUCCGGU--UCCaGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 114933 | 0.69 | 0.696141 |
Target: 5'- uUCCUGaAgGUGGAGGacaCCGAGGcCGAc -3' miRNA: 3'- gAGGACcUgCACCUCC---GGUUCCaGCU- -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 95566 | 0.69 | 0.686217 |
Target: 5'- -cCCUGGAgGUggcccacgaggcGGAGGCCcuGGUCa- -3' miRNA: 3'- gaGGACCUgCA------------CCUCCGGuuCCAGcu -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 150830 | 0.69 | 0.686217 |
Target: 5'- gCUCCgcgGGGCGccagGGGGcGCCGgucGGGUCGc -3' miRNA: 3'- -GAGGa--CCUGCa---CCUC-CGGU---UCCAGCu -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 134991 | 0.69 | 0.65622 |
Target: 5'- -gCCUGGcccGCgGUGGGcGCCAGGGUCGu -3' miRNA: 3'- gaGGACC---UG-CACCUcCGGUUCCAGCu -5' |
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5131 | 3' | -57.9 | NC_001798.1 | + | 6360 | 0.7 | 0.595927 |
Target: 5'- -gCCggggGGACGggccgGGGGGCCGGGGggcCGGg -3' miRNA: 3'- gaGGa---CCUGCa----CCUCCGGUUCCa--GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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