Results 61 - 80 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5131 | 5' | -63.5 | NC_001798.1 | + | 5594 | 0.67 | 0.533622 |
Target: 5'- gGCgaggucGCCCcguugGUCCGCGgGCGgcucCGCCc -3' miRNA: 3'- gCGac----CGGGa----CAGGCGCgCGCa---GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 28998 | 0.67 | 0.533622 |
Target: 5'- gCGCcGGCCaa--CCGCGCGC--CGCCg -3' miRNA: 3'- -GCGaCCGGgacaGGCGCGCGcaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 42341 | 0.67 | 0.533622 |
Target: 5'- gCGCaGGCUgUGgCCGUGgGCGUacaCGCCc -3' miRNA: 3'- -GCGaCCGGgACaGGCGCgCGCA---GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 122472 | 0.67 | 0.533622 |
Target: 5'- cCGC-GGCCCaGaCgGCGCugcuGCGUCGCUu -3' miRNA: 3'- -GCGaCCGGGaCaGgCGCG----CGCAGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 52366 | 0.67 | 0.533622 |
Target: 5'- gCGCUGGgCgacaCCGCgGCGCGcCGCCu -3' miRNA: 3'- -GCGACCgGgacaGGCG-CGCGCaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 103043 | 0.67 | 0.533622 |
Target: 5'- gGC-GGCCUcGcgUCGCacccccucGCGCGUCGCCg -3' miRNA: 3'- gCGaCCGGGaCa-GGCG--------CGCGCAGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 101774 | 0.67 | 0.52803 |
Target: 5'- gCGCUgcuggcguuaacuaaGGCCCggccUCCGCGC-CGggCGCCu -3' miRNA: 3'- -GCGA---------------CCGGGac--AGGCGCGcGCa-GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 71967 | 0.67 | 0.524314 |
Target: 5'- uGCUGGCCCUGguggUCGgggaCGCGCugaggGCCa -3' miRNA: 3'- gCGACCGGGACa---GGC----GCGCGcag--CGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 88795 | 0.67 | 0.524314 |
Target: 5'- aGCUGaucgaacuccGCCCagcgcgcGUCacguaCGCGCGCGUCGCg -3' miRNA: 3'- gCGAC----------CGGGa------CAG-----GCGCGCGCAGCGg -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 124151 | 0.67 | 0.524314 |
Target: 5'- gCGgaGG-CCUGUCC-C-UGCGUCGCCc -3' miRNA: 3'- -GCgaCCgGGACAGGcGcGCGCAGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 26372 | 0.67 | 0.524314 |
Target: 5'- gCGCgGGCCgCggcgGgaguUCUGCGCGCGggCGCUg -3' miRNA: 3'- -GCGaCCGG-Ga---C----AGGCGCGCGCa-GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 118782 | 0.67 | 0.524314 |
Target: 5'- aCGCgGGUgCUGcCCaCGCGaauCGUCGCCu -3' miRNA: 3'- -GCGaCCGgGACaGGcGCGC---GCAGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 75852 | 0.67 | 0.518758 |
Target: 5'- gCGCUGGCCCaGUuuGCccggggcgaagagauGCGgGUCGa- -3' miRNA: 3'- -GCGACCGGGaCAggCG---------------CGCgCAGCgg -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 24933 | 0.67 | 0.515068 |
Target: 5'- uGCUGaGCUCcG-CCGC-CGCGcCGCCg -3' miRNA: 3'- gCGAC-CGGGaCaGGCGcGCGCaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 117654 | 0.67 | 0.515068 |
Target: 5'- uCGCcGGCCCUGcaacCCGCGgggaCGCG-CgGCCg -3' miRNA: 3'- -GCGaCCGGGACa---GGCGC----GCGCaG-CGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 24858 | 0.67 | 0.515068 |
Target: 5'- cCGCcgUGGCCg---CCGUGCGCGccgugagccuggUCGCCg -3' miRNA: 3'- -GCG--ACCGGgacaGGCGCGCGC------------AGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 25961 | 0.67 | 0.515068 |
Target: 5'- gCGCUGGCCg-G-CgGCGCGgGaccugCGCCg -3' miRNA: 3'- -GCGACCGGgaCaGgCGCGCgCa----GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 26310 | 0.67 | 0.515068 |
Target: 5'- cCGCUgcGGCCC-GUCUacguggcgcugGgGCGCGaCGCCg -3' miRNA: 3'- -GCGA--CCGGGaCAGG-----------CgCGCGCaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 28212 | 0.67 | 0.515068 |
Target: 5'- cCGgaGGCCCcGcacgCCGCGCcUGcCGCCg -3' miRNA: 3'- -GCgaCCGGGaCa---GGCGCGcGCaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 2990 | 0.68 | 0.505889 |
Target: 5'- gGCcGGCCCgcgGgccCCGgGCGCGggggCGCg -3' miRNA: 3'- gCGaCCGGGa--Ca--GGCgCGCGCa---GCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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