miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 51141 0.66 0.567579
Target:  5'- gGgaGGCCCgcggucaccccggGUcCCGaCGCGCGUCcgagGCCc -3'
miRNA:   3'- gCgaCCGGGa------------CA-GGC-GCGCGCAG----CGG- -5'
5131 5' -63.5 NC_001798.1 + 105429 0.67 0.561877
Target:  5'- gCGCUGGgCCUGcagcacugCCGCcCGCucCGCCg -3'
miRNA:   3'- -GCGACCgGGACa-------GGCGcGCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 42552 0.67 0.561877
Target:  5'- aCGacgGaGUCCgGUUCGCuGgGCGUCGCCg -3'
miRNA:   3'- -GCga-C-CGGGaCAGGCG-CgCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 87199 0.67 0.561877
Target:  5'- gGCUGGCCaCcGUCaGC-CGCGagGCCc -3'
miRNA:   3'- gCGACCGG-GaCAGgCGcGCGCagCGG- -5'
5131 5' -63.5 NC_001798.1 + 121480 0.67 0.561877
Target:  5'- gGCUGuucgucuCCCUGccggUCGCGUGCGaCGCCc -3'
miRNA:   3'- gCGACc------GGGACa---GGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 138892 0.67 0.561877
Target:  5'- aGCUGGUCg-GUCCGCuuGgGcCGCCc -3'
miRNA:   3'- gCGACCGGgaCAGGCGcgCgCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 15874 0.67 0.561877
Target:  5'- ---gGGgUCUGUCCGCaggGCGCGUCGaaaCCg -3'
miRNA:   3'- gcgaCCgGGACAGGCG---CGCGCAGC---GG- -5'
5131 5' -63.5 NC_001798.1 + 110677 0.67 0.561877
Target:  5'- cCGC-GGUCUguuuguuauugUGUCCGcCGUGCGUcCGCUa -3'
miRNA:   3'- -GCGaCCGGG-----------ACAGGC-GCGCGCA-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 106482 0.67 0.560928
Target:  5'- gCGC-GGCCCgagGUCCacuucGCauauuaaggugacGCGCGUgGCCu -3'
miRNA:   3'- -GCGaCCGGGa--CAGG-----CG-------------CGCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 4048 0.67 0.552408
Target:  5'- gCGCgGGCCCgg-CgGCGCuccaggcggcccGCGgUCGCCg -3'
miRNA:   3'- -GCGaCCGGGacaGgCGCG------------CGC-AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 74579 0.67 0.552408
Target:  5'- gGCUcgGGCCCggucGUCCcCGCGCuccccgCGCCc -3'
miRNA:   3'- gCGA--CCGGGa---CAGGcGCGCGca----GCGG- -5'
5131 5' -63.5 NC_001798.1 + 149237 0.67 0.552408
Target:  5'- cCG-UGGCCCg---CGgGgGCGUCGCCg -3'
miRNA:   3'- -GCgACCGGGacagGCgCgCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 30846 0.67 0.552408
Target:  5'- uCGCUGGggggacaCacgGUCCGCGCcCuGUCGCCc -3'
miRNA:   3'- -GCGACCg------Gga-CAGGCGCGcG-CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 145535 0.67 0.552408
Target:  5'- gCGCgcccccGCCCgg-CCGCcCGCGUCGCg -3'
miRNA:   3'- -GCGac----CGGGacaGGCGcGCGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 153220 0.67 0.54675
Target:  5'- cCGCccgacGGCCCggGcCCGCggcggcggaggacccGCGCGcCGCCg -3'
miRNA:   3'- -GCGa----CCGGGa-CaGGCG---------------CGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 74855 0.67 0.543928
Target:  5'- uGCgGGUCCUGgaggugggggcagugCCG-GUGgGUCGCCa -3'
miRNA:   3'- gCGaCCGGGACa--------------GGCgCGCgCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 137943 0.67 0.542988
Target:  5'- gGCc-GCCCgGUCCGcCGCGCGcUGCUc -3'
miRNA:   3'- gCGacCGGGaCAGGC-GCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 118989 0.67 0.542988
Target:  5'- aCGCcccUGGCCCgcgagauagUCGCGCGgcugGUCGCCc -3'
miRNA:   3'- -GCG---ACCGGGaca------GGCGCGCg---CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 52366 0.67 0.533622
Target:  5'- gCGCUGGgCgacaCCGCgGCGCGcCGCCu -3'
miRNA:   3'- -GCGACCgGgacaGGCG-CGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 122472 0.67 0.533622
Target:  5'- cCGC-GGCCCaGaCgGCGCugcuGCGUCGCUu -3'
miRNA:   3'- -GCGaCCGGGaCaGgCGCG----CGCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.