miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 28998 0.67 0.533622
Target:  5'- gCGCcGGCCaa--CCGCGCGC--CGCCg -3'
miRNA:   3'- -GCGaCCGGgacaGGCGCGCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 30846 0.67 0.552408
Target:  5'- uCGCUGGggggacaCacgGUCCGCGCcCuGUCGCCc -3'
miRNA:   3'- -GCGACCg------Gga-CAGGCGCGcG-CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 31284 0.7 0.394176
Target:  5'- gGC-GGCCCUG-CCGuCGCGgcCGUCGUg -3'
miRNA:   3'- gCGaCCGGGACaGGC-GCGC--GCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 31579 0.66 0.580939
Target:  5'- cCGC-GcGCCC---CCGCGCGgcCGUCGCCc -3'
miRNA:   3'- -GCGaC-CGGGacaGGCGCGC--GCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 32048 0.74 0.223736
Target:  5'- cCGCUcGCCCcggcGUCCGCGgGCGccgCGCCc -3'
miRNA:   3'- -GCGAcCGGGa---CAGGCGCgCGCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 39499 0.69 0.438693
Target:  5'- cCGCgGGCCCccggagacgucgagcUGcuccccUCCGCGcCGCGccUCGCCg -3'
miRNA:   3'- -GCGaCCGGG---------------AC------AGGCGC-GCGC--AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 42341 0.67 0.533622
Target:  5'- gCGCaGGCUgUGgCCGUGgGCGUacaCGCCc -3'
miRNA:   3'- -GCGaCCGGgACaGGCGCgCGCA---GCGG- -5'
5131 5' -63.5 NC_001798.1 + 42552 0.67 0.561877
Target:  5'- aCGacgGaGUCCgGUUCGCuGgGCGUCGCCg -3'
miRNA:   3'- -GCga-C-CGGGaCAGGCG-CgCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 43148 0.69 0.435297
Target:  5'- aCGCgGGCCCagucGUCC-CGCGC--CGCCg -3'
miRNA:   3'- -GCGaCCGGGa---CAGGcGCGCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 47675 0.79 0.093747
Target:  5'- gCGCUGGCCCga--UGCGCGCG-CGCCc -3'
miRNA:   3'- -GCGACCGGGacagGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 47821 0.66 0.619409
Target:  5'- gGCUcucacGGCCCcGgccCCGCGCGCGcUCcuCCa -3'
miRNA:   3'- gCGA-----CCGGGaCa--GGCGCGCGC-AGc-GG- -5'
5131 5' -63.5 NC_001798.1 + 49451 0.69 0.426874
Target:  5'- uGCUcGGCCCUGUaCCG-GUaccuGCG-CGCCa -3'
miRNA:   3'- gCGA-CCGGGACA-GGCgCG----CGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 50910 0.73 0.250826
Target:  5'- gGCcuccGGCCaccaUGUCCGUGCGCGggcaUGCCg -3'
miRNA:   3'- gCGa---CCGGg---ACAGGCGCGCGCa---GCGG- -5'
5131 5' -63.5 NC_001798.1 + 51141 0.66 0.567579
Target:  5'- gGgaGGCCCgcggucaccccggGUcCCGaCGCGCGUCcgagGCCc -3'
miRNA:   3'- gCgaCCGGGa------------CA-GGC-GCGCGCAG----CGG- -5'
5131 5' -63.5 NC_001798.1 + 52034 0.71 0.308992
Target:  5'- -aCUGGCCCgggGUgCGCGCGCuccuggggcgcgacuGUCGCg -3'
miRNA:   3'- gcGACCGGGa--CAgGCGCGCG---------------CAGCGg -5'
5131 5' -63.5 NC_001798.1 + 52366 0.67 0.533622
Target:  5'- gCGCUGGgCgacaCCGCgGCGCGcCGCCu -3'
miRNA:   3'- -GCGACCgGgacaGGCG-CGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 52568 0.74 0.201992
Target:  5'- uGCUGGgCCUGgccgacacgguggUCGCGUGCGUgGCCc -3'
miRNA:   3'- gCGACCgGGACa------------GGCGCGCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 52874 0.68 0.461129
Target:  5'- uGCUggGGCCgCggGUCCGCGCGUGgacaucauggCGCa -3'
miRNA:   3'- gCGA--CCGG-Ga-CAGGCGCGCGCa---------GCGg -5'
5131 5' -63.5 NC_001798.1 + 55177 0.68 0.461129
Target:  5'- gCGCUGGCCaacgacgGcCCGaCGaaCGUCGCCg -3'
miRNA:   3'- -GCGACCGGga-----CaGGC-GCgcGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 58319 0.68 0.461129
Target:  5'- aGCUccgucaGGCCCg--CCGC-CGCGUgGCCc -3'
miRNA:   3'- gCGA------CCGGGacaGGCGcGCGCAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.