Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5131 | 5' | -63.5 | NC_001798.1 | + | 17139 | 0.66 | 0.580939 |
Target: 5'- gCGCggugaGGCgCgauUCCGCGUGCGUCGg- -3' miRNA: 3'- -GCGa----CCGgGac-AGGCGCGCGCAGCgg -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 18596 | 0.7 | 0.386258 |
Target: 5'- aGCa-GCCCccccggGUCCGCGCGCcGUccCGCCg -3' miRNA: 3'- gCGacCGGGa-----CAGGCGCGCG-CA--GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 24026 | 0.66 | 0.571389 |
Target: 5'- gGgUGGCUCcagaacCCGCGCGUGgCGCCc -3' miRNA: 3'- gCgACCGGGaca---GGCGCGCGCaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 24803 | 0.69 | 0.407874 |
Target: 5'- gCGCUGGUgCUGaUgCGCcugcgcggggaccuGCGCGUgGCCg -3' miRNA: 3'- -GCGACCGgGAC-AgGCG--------------CGCGCAgCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 24858 | 0.67 | 0.515068 |
Target: 5'- cCGCcgUGGCCg---CCGUGCGCGccgugagccuggUCGCCg -3' miRNA: 3'- -GCG--ACCGGgacaGGCGCGCGC------------AGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 24933 | 0.67 | 0.515068 |
Target: 5'- uGCUGaGCUCcG-CCGC-CGCGcCGCCg -3' miRNA: 3'- gCGAC-CGGGaCaGGCGcGCGCaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 25417 | 0.79 | 0.098543 |
Target: 5'- gCGCUGGCCUcgcUGgCCGCGCGCuG-CGCCg -3' miRNA: 3'- -GCGACCGGG---ACaGGCGCGCG-CaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 25488 | 0.69 | 0.426874 |
Target: 5'- gCGCgccucgGGCCCgcugcgCCGCGCGgCGgccuggaugCGCCa -3' miRNA: 3'- -GCGa-----CCGGGaca---GGCGCGC-GCa--------GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 25664 | 0.66 | 0.580939 |
Target: 5'- uGCUggcGGCCCUGggcaaccggcUCUGCGgGCc-CGCCa -3' miRNA: 3'- gCGA---CCGGGAC----------AGGCGCgCGcaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 25961 | 0.67 | 0.515068 |
Target: 5'- gCGCUGGCCg-G-CgGCGCGgGaccugCGCCg -3' miRNA: 3'- -GCGACCGGgaCaGgCGCGCgCa----GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 25996 | 0.69 | 0.430232 |
Target: 5'- uGCUGGCCUccggccgcgUGUucgggccgggggucuUCGCGCGCGUggagGCCg -3' miRNA: 3'- gCGACCGGG---------ACA---------------GGCGCGCGCAg---CGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 26093 | 0.66 | 0.619409 |
Target: 5'- cCGCggGGCCaacgugcgGUaCCGCGUGCGcacgCGCUu -3' miRNA: 3'- -GCGa-CCGGga------CA-GGCGCGCGCa---GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 26142 | 0.74 | 0.218626 |
Target: 5'- aCGCUGguGCCCaUGUCCcCGCGCGaguacCGCCg -3' miRNA: 3'- -GCGAC--CGGG-ACAGGcGCGCGCa----GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 26310 | 0.67 | 0.515068 |
Target: 5'- cCGCUgcGGCCC-GUCUacguggcgcugGgGCGCGaCGCCg -3' miRNA: 3'- -GCGA--CCGGGaCAGG-----------CgCGCGCaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 26372 | 0.67 | 0.524314 |
Target: 5'- gCGCgGGCCgCggcgGgaguUCUGCGCGCGggCGCUg -3' miRNA: 3'- -GCGaCCGG-Ga---C----AGGCGCGCGCa-GCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 26458 | 0.66 | 0.609763 |
Target: 5'- aCGCgGGCCCgcccCCGCagauacgcuGgGCGUCgGCCg -3' miRNA: 3'- -GCGaCCGGGaca-GGCG---------CgCGCAG-CGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 26563 | 0.66 | 0.619409 |
Target: 5'- gGCUGGCCacg-CCGCcgagGCGCGa-GCCc -3' miRNA: 3'- gCGACCGGgacaGGCG----CGCGCagCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 27621 | 0.66 | 0.580939 |
Target: 5'- gGCU-GCCCUG-CCGCcCGCc-CGCCg -3' miRNA: 3'- gCGAcCGGGACaGGCGcGCGcaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 28212 | 0.67 | 0.515068 |
Target: 5'- cCGgaGGCCCcGcacgCCGCGCcUGcCGCCg -3' miRNA: 3'- -GCgaCCGGGaCa---GGCGCGcGCaGCGG- -5' |
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5131 | 5' | -63.5 | NC_001798.1 | + | 28614 | 0.71 | 0.341006 |
Target: 5'- gCGcCUGGCCCgacggggGUCCuggGCGCGCGagcggGCCg -3' miRNA: 3'- -GC-GACCGGGa------CAGG---CGCGCGCag---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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