miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 128291 0.66 0.619409
Target:  5'- -uCUGGCgCCUGacgcgCCGCGCcccccCGUcCGCCg -3'
miRNA:   3'- gcGACCG-GGACa----GGCGCGc----GCA-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 124424 0.68 0.478792
Target:  5'- aGCUGcCCCgcgGUCgCGCGgGCcGUgGCCa -3'
miRNA:   3'- gCGACcGGGa--CAG-GCGCgCG-CAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 124151 0.67 0.524314
Target:  5'- gCGgaGG-CCUGUCC-C-UGCGUCGCCc -3'
miRNA:   3'- -GCgaCCgGGACAGGcGcGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 123455 0.66 0.606872
Target:  5'- gCGCgcccccgacccggGGCCCgaagccgaccucgUCGCGCGCaUCGCCa -3'
miRNA:   3'- -GCGa------------CCGGGaca----------GGCGCGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 123311 0.7 0.378446
Target:  5'- gCGCUGGCCCc-UCUGCuuuugGUGCGUCuCCg -3'
miRNA:   3'- -GCGACCGGGacAGGCG-----CGCGCAGcGG- -5'
5131 5' -63.5 NC_001798.1 + 123234 0.68 0.487747
Target:  5'- gGCUacgggacccGGCCUUGUCCGCuGaCGCGU-GCUu -3'
miRNA:   3'- gCGA---------CCGGGACAGGCG-C-GCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 122472 0.67 0.533622
Target:  5'- cCGC-GGCCCaGaCgGCGCugcuGCGUCGCUu -3'
miRNA:   3'- -GCGaCCGGGaCaGgCGCG----CGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 122423 0.71 0.341006
Target:  5'- aCGgaGGCCUgugCCGCcgaGCGCGUCGUg -3'
miRNA:   3'- -GCgaCCGGGacaGGCG---CGCGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 122088 0.68 0.469918
Target:  5'- uGCUGGCgggCCUGgagCCGCccggcgggggGCGCuUUGCCa -3'
miRNA:   3'- gCGACCG---GGACa--GGCG----------CGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 121963 0.68 0.496781
Target:  5'- cCGCca-CCCgGUCCGCGCGCGcC-CCa -3'
miRNA:   3'- -GCGaccGGGaCAGGCGCGCGCaGcGG- -5'
5131 5' -63.5 NC_001798.1 + 121480 0.67 0.561877
Target:  5'- gGCUGuucgucuCCCUGccggUCGCGUGCGaCGCCc -3'
miRNA:   3'- gCGACc------GGGACa---GGCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 121259 0.68 0.461129
Target:  5'- gGCgggGGUCCcgcUGUCCGCccucguGCGCGgcCGCCc -3'
miRNA:   3'- gCGa--CCGGG---ACAGGCG------CGCGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 118989 0.67 0.542988
Target:  5'- aCGCcccUGGCCCgcgagauagUCGCGCGgcugGUCGCCc -3'
miRNA:   3'- -GCG---ACCGGGaca------GGCGCGCg---CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 118782 0.67 0.524314
Target:  5'- aCGCgGGUgCUGcCCaCGCGaauCGUCGCCu -3'
miRNA:   3'- -GCGaCCGgGACaGGcGCGC---GCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 117654 0.67 0.515068
Target:  5'- uCGCcGGCCCUGcaacCCGCGgggaCGCG-CgGCCg -3'
miRNA:   3'- -GCGaCCGGGACa---GGCGC----GCGCaG-CGG- -5'
5131 5' -63.5 NC_001798.1 + 117556 0.72 0.286837
Target:  5'- gGCUGcGCCCagGUgCCGCG-GCG-CGCCg -3'
miRNA:   3'- gCGAC-CGGGa-CA-GGCGCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 116527 0.66 0.570436
Target:  5'- gCGCUGcuGCaCCgcggggGUCCGCuucgaccGCGUGUaCGCCa -3'
miRNA:   3'- -GCGAC--CG-GGa-----CAGGCG-------CGCGCA-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 115597 0.69 0.402198
Target:  5'- uCGCccacGGCCggGUCCG-GUGgGUCGCCg -3'
miRNA:   3'- -GCGa---CCGGgaCAGGCgCGCgCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 114275 0.66 0.571389
Target:  5'- aGCUcGG-CCUGUCCgugGCGUGCGUgUGCa -3'
miRNA:   3'- gCGA-CCgGGACAGG---CGCGCGCA-GCGg -5'
5131 5' -63.5 NC_001798.1 + 113503 0.66 0.608799
Target:  5'- gCGC-GGCCCUGUgCGCccuggugGCG-GcCGCCc -3'
miRNA:   3'- -GCGaCCGGGACAgGCG-------CGCgCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.