miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 117556 0.72 0.286837
Target:  5'- gGCUGcGCCCagGUgCCGCG-GCG-CGCCg -3'
miRNA:   3'- gCGAC-CGGGa-CA-GGCGCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 106848 0.72 0.293221
Target:  5'- uGgaGGCCCUGgggCCGCGCGacaauaUCGUCu -3'
miRNA:   3'- gCgaCCGGGACa--GGCGCGCgc----AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 71084 0.72 0.299715
Target:  5'- cCGCgucaGCCCgcgGUCgGCGUGCG-CGCCc -3'
miRNA:   3'- -GCGac--CGGGa--CAGgCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 52034 0.71 0.308992
Target:  5'- -aCUGGCCCgggGUgCGCGCGCuccuggggcgcgacuGUCGCg -3'
miRNA:   3'- gcGACCGGGa--CAgGCGCGCG---------------CAGCGg -5'
5131 5' -63.5 NC_001798.1 + 92305 0.71 0.336697
Target:  5'- uGCUGucGCUaCUGUCgGCGCGCagcggcgacgcggacGUCGCCg -3'
miRNA:   3'- gCGAC--CGG-GACAGgCGCGCG---------------CAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 28614 0.71 0.341006
Target:  5'- gCGcCUGGCCCgacggggGUCCuggGCGCGCGagcggGCCg -3'
miRNA:   3'- -GC-GACCGGGa------CAGG---CGCGCGCag---CGG- -5'
5131 5' -63.5 NC_001798.1 + 122423 0.71 0.341006
Target:  5'- aCGgaGGCCUgugCCGCcgaGCGCGUCGUg -3'
miRNA:   3'- -GCgaCCGGGacaGGCG---CGCGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 102184 0.7 0.355655
Target:  5'- uCGUggGGCCCggaagCCugGCGCGCGgcgCGCCg -3'
miRNA:   3'- -GCGa-CCGGGaca--GG--CGCGCGCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 150383 0.7 0.370741
Target:  5'- gCGCgGGCCCgg-CCGCGUccGCGcUCGCa -3'
miRNA:   3'- -GCGaCCGGGacaGGCGCG--CGC-AGCGg -5'
5131 5' -63.5 NC_001798.1 + 96070 0.7 0.376896
Target:  5'- uGUcaggGGCCCgccgccgcaucaGUCCGCGCGgGgcgCGCCu -3'
miRNA:   3'- gCGa---CCGGGa-----------CAGGCGCGCgCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 3730 0.7 0.378446
Target:  5'- cCGCgugaucagGGCguaCUG-CUGCGcCGCGUCGCCc -3'
miRNA:   3'- -GCGa-------CCGg--GACaGGCGC-GCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 105218 0.7 0.378446
Target:  5'- gCGCU-GCCCcGUCCGCaGCGCccuccccccUCGCCu -3'
miRNA:   3'- -GCGAcCGGGaCAGGCG-CGCGc--------AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 123311 0.7 0.378446
Target:  5'- gCGCUGGCCCc-UCUGCuuuugGUGCGUCuCCg -3'
miRNA:   3'- -GCGACCGGGacAGGCG-----CGCGCAGcGG- -5'
5131 5' -63.5 NC_001798.1 + 18596 0.7 0.386258
Target:  5'- aGCa-GCCCccccggGUCCGCGCGCcGUccCGCCg -3'
miRNA:   3'- gCGacCGGGa-----CAGGCGCGCG-CA--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 72928 0.7 0.394176
Target:  5'- gCGCUGGUCgUG---GCGCGCuUCGCCa -3'
miRNA:   3'- -GCGACCGGgACaggCGCGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 31284 0.7 0.394176
Target:  5'- gGC-GGCCCUG-CCGuCGCGgcCGUCGUg -3'
miRNA:   3'- gCGaCCGGGACaGGC-GCGC--GCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 115597 0.69 0.402198
Target:  5'- uCGCccacGGCCggGUCCG-GUGgGUCGCCg -3'
miRNA:   3'- -GCGa---CCGGgaCAGGCgCGCgCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 24803 0.69 0.407874
Target:  5'- gCGCUGGUgCUGaUgCGCcugcgcggggaccuGCGCGUgGCCg -3'
miRNA:   3'- -GCGACCGgGAC-AgGCG--------------CGCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 85292 0.69 0.418549
Target:  5'- gGCgggGGCCgggGUCCGCcCGCGgccCGCCc -3'
miRNA:   3'- gCGa--CCGGga-CAGGCGcGCGCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 111992 0.69 0.418549
Target:  5'- aGCUcgauGaCCCUGUCuCGCGCGCGcacgCGCa -3'
miRNA:   3'- gCGAc---C-GGGACAG-GCGCGCGCa---GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.