miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 85292 0.69 0.418549
Target:  5'- gGCgggGGCCgggGUCCGCcCGCGgccCGCCc -3'
miRNA:   3'- gCGa--CCGGga-CAGGCGcGCGCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 110000 0.69 0.426037
Target:  5'- gCGCUGggcgcacuacaacGCCCUGaUCCGCGCcuuCGUC-CCg -3'
miRNA:   3'- -GCGAC-------------CGGGAC-AGGCGCGc--GCAGcGG- -5'
5131 5' -63.5 NC_001798.1 + 49451 0.69 0.426874
Target:  5'- uGCUcGGCCCUGUaCCG-GUaccuGCG-CGCCa -3'
miRNA:   3'- gCGA-CCGGGACA-GGCgCG----CGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 25488 0.69 0.426874
Target:  5'- gCGCgccucgGGCCCgcugcgCCGCGCGgCGgccuggaugCGCCa -3'
miRNA:   3'- -GCGa-----CCGGGaca---GGCGCGC-GCa--------GCGG- -5'
5131 5' -63.5 NC_001798.1 + 25996 0.69 0.430232
Target:  5'- uGCUGGCCUccggccgcgUGUucgggccgggggucuUCGCGCGCGUggagGCCg -3'
miRNA:   3'- gCGACCGGG---------ACA---------------GGCGCGCGCAg---CGG- -5'
5131 5' -63.5 NC_001798.1 + 79390 0.69 0.435297
Target:  5'- gCGCgGGCgCggaGUCCGCGCcCG-CGCCc -3'
miRNA:   3'- -GCGaCCGgGa--CAGGCGCGcGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 43148 0.69 0.435297
Target:  5'- aCGCgGGCCCagucGUCC-CGCGC--CGCCg -3'
miRNA:   3'- -GCGaCCGGGa---CAGGcGCGCGcaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 39499 0.69 0.438693
Target:  5'- cCGCgGGCCCccggagacgucgagcUGcuccccUCCGCGcCGCGccUCGCCg -3'
miRNA:   3'- -GCGaCCGGG---------------AC------AGGCGC-GCGC--AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 68222 0.69 0.443816
Target:  5'- gCGCaGGCCCgccaccCCGC-CGCG-CGCCa -3'
miRNA:   3'- -GCGaCCGGGaca---GGCGcGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 111213 0.68 0.452427
Target:  5'- uGCUcGGCCacgGUcccggCCGCcaGCGCGUCGCg -3'
miRNA:   3'- gCGA-CCGGga-CA-----GGCG--CGCGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 77253 0.68 0.452427
Target:  5'- aCGCggugucGGCCCUGggcgcggCCGCcCGCGacccggccUCGCCc -3'
miRNA:   3'- -GCGa-----CCGGGACa------GGCGcGCGC--------AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 4978 0.68 0.452427
Target:  5'- cCGC-GGCCCUG--CGCGuCGuCGUCGUCu -3'
miRNA:   3'- -GCGaCCGGGACagGCGC-GC-GCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 58319 0.68 0.461129
Target:  5'- aGCUccgucaGGCCCg--CCGC-CGCGUgGCCc -3'
miRNA:   3'- gCGA------CCGGGacaGGCGcGCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 85255 0.68 0.461129
Target:  5'- cCGC-GGCCgCgcgGggCCGCGCGCGagGCUu -3'
miRNA:   3'- -GCGaCCGG-Ga--Ca-GGCGCGCGCagCGG- -5'
5131 5' -63.5 NC_001798.1 + 121259 0.68 0.461129
Target:  5'- gGCgggGGUCCcgcUGUCCGCccucguGCGCGgcCGCCc -3'
miRNA:   3'- gCGa--CCGGG---ACAGGCG------CGCGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 80625 0.68 0.461129
Target:  5'- uGCUGGCCgccgcgacccacCgcacccccgCCGCGCGCGUUacgGCCa -3'
miRNA:   3'- gCGACCGG------------Gaca------GGCGCGCGCAG---CGG- -5'
5131 5' -63.5 NC_001798.1 + 143294 0.68 0.461129
Target:  5'- aCGUaggGGCC--GUCCGCccccgGCGgGUCGCCg -3'
miRNA:   3'- -GCGa--CCGGgaCAGGCG-----CGCgCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 52874 0.68 0.461129
Target:  5'- uGCUggGGCCgCggGUCCGCGCGUGgacaucauggCGCa -3'
miRNA:   3'- gCGA--CCGG-Ga-CAGGCGCGCGCa---------GCGg -5'
5131 5' -63.5 NC_001798.1 + 55177 0.68 0.461129
Target:  5'- gCGCUGGCCaacgacgGcCCGaCGaaCGUCGCCg -3'
miRNA:   3'- -GCGACCGGga-----CaGGC-GCgcGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 97237 0.68 0.464634
Target:  5'- aGCUGGCgCUGUUCGgGCgGCGggcggagcacuucgaUCGCg -3'
miRNA:   3'- gCGACCGgGACAGGCgCG-CGC---------------AGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.