miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 79947 0.66 0.619409
Target:  5'- aGCUGGgCUgggcGUCCGgaGCGgCGgCGCCg -3'
miRNA:   3'- gCGACCgGGa---CAGGCg-CGC-GCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 154172 0.66 0.619409
Target:  5'- gCGUaGGCCCggagCCGgaGCGCGUCGg- -3'
miRNA:   3'- -GCGaCCGGGaca-GGCg-CGCGCAGCgg -5'
5131 5' -63.5 NC_001798.1 + 26093 0.66 0.619409
Target:  5'- cCGCggGGCCaacgugcgGUaCCGCGUGCGcacgCGCUu -3'
miRNA:   3'- -GCGa-CCGGga------CA-GGCGCGCGCa---GCGG- -5'
5131 5' -63.5 NC_001798.1 + 80906 0.66 0.619409
Target:  5'- aGCUcccGCgCCUGUCgGCGCuCaUCGCCg -3'
miRNA:   3'- gCGAc--CG-GGACAGgCGCGcGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 85596 0.66 0.619409
Target:  5'- uGUcGGCuCCU--UCGCGCGCuUCGCCc -3'
miRNA:   3'- gCGaCCG-GGAcaGGCGCGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 5725 0.66 0.609763
Target:  5'- gCGCUGgcGCCCUGcCCGgGgccCGCGUCaucCCg -3'
miRNA:   3'- -GCGAC--CGGGACaGGCgC---GCGCAGc--GG- -5'
5131 5' -63.5 NC_001798.1 + 106333 0.66 0.609763
Target:  5'- aGCUGcuucauGCCCgugGUCCGCuguuCGCGUUugcugGCCg -3'
miRNA:   3'- gCGAC------CGGGa--CAGGCGc---GCGCAG-----CGG- -5'
5131 5' -63.5 NC_001798.1 + 108863 0.66 0.580939
Target:  5'- gGCUGGC---GUUCGgGUGCGaCGCCg -3'
miRNA:   3'- gCGACCGggaCAGGCgCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 132133 0.66 0.580939
Target:  5'- gGC-GGCCCUGcgCCgccgggggccgGCGgGCGgggCGCCc -3'
miRNA:   3'- gCGaCCGGGACa-GG-----------CGCgCGCa--GCGG- -5'
5131 5' -63.5 NC_001798.1 + 16198 0.66 0.580939
Target:  5'- aCGCacgGGCCgCccUCCGCaCGCGcCGCCu -3'
miRNA:   3'- -GCGa--CCGG-GacAGGCGcGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 31579 0.66 0.580939
Target:  5'- cCGC-GcGCCC---CCGCGCGgcCGUCGCCc -3'
miRNA:   3'- -GCGaC-CGGGacaGGCGCGC--GCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 98556 0.66 0.586685
Target:  5'- gCGCUGGUCgUGggggcgcugguggCCGCGgugGCGUCGgCg -3'
miRNA:   3'- -GCGACCGGgACa------------GGCGCg--CGCAGCgG- -5'
5131 5' -63.5 NC_001798.1 + 100864 0.66 0.590522
Target:  5'- uGCUGGUCCUGgCCG-GCcugGUCGCg -3'
miRNA:   3'- gCGACCGGGACaGGCgCGcg-CAGCGg -5'
5131 5' -63.5 NC_001798.1 + 98612 0.66 0.590522
Target:  5'- gGC-GGCCCc--CCGCGCcucgggcgGCGUgGCCg -3'
miRNA:   3'- gCGaCCGGGacaGGCGCG--------CGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 95586 0.66 0.600132
Target:  5'- gCGgaGGCCCUGgucagCCaGCuCGgCGcCGCCg -3'
miRNA:   3'- -GCgaCCGGGACa----GG-CGcGC-GCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 106698 0.66 0.600132
Target:  5'- aGCgGGCCUaccgacggCCGCGCGgCGUC-CCg -3'
miRNA:   3'- gCGaCCGGGaca-----GGCGCGC-GCAGcGG- -5'
5131 5' -63.5 NC_001798.1 + 153022 0.66 0.600132
Target:  5'- gGCggaguccgGGCCCgcgcggCgGCGCGCGguuggccggCGCCg -3'
miRNA:   3'- gCGa-------CCGGGaca---GgCGCGCGCa--------GCGG- -5'
5131 5' -63.5 NC_001798.1 + 5393 0.66 0.600132
Target:  5'- gGCggcGGCCCguugGU-CGCGC-CGcCGCCg -3'
miRNA:   3'- gCGa--CCGGGa---CAgGCGCGcGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 123455 0.66 0.606872
Target:  5'- gCGCgcccccgacccggGGCCCgaagccgaccucgUCGCGCGCaUCGCCa -3'
miRNA:   3'- -GCGa------------CCGGGaca----------GGCGCGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 113503 0.66 0.608799
Target:  5'- gCGC-GGCCCUGUgCGCccuggugGCG-GcCGCCc -3'
miRNA:   3'- -GCGaCCGGGACAgGCG-------CGCgCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.