miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 154474 0.68 0.478792
Target:  5'- aGCcGGCCgCUcccCCGCGgGCGcCGCCc -3'
miRNA:   3'- gCGaCCGG-GAca-GGCGCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 154172 0.66 0.619409
Target:  5'- gCGUaGGCCCggagCCGgaGCGCGUCGg- -3'
miRNA:   3'- -GCGaCCGGGaca-GGCg-CGCGCAGCgg -5'
5131 5' -63.5 NC_001798.1 + 153904 0.68 0.496781
Target:  5'- uGCcGGCgUaGUCCGCGU-CGUCGCUg -3'
miRNA:   3'- gCGaCCGgGaCAGGCGCGcGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 153220 0.67 0.54675
Target:  5'- cCGCccgacGGCCCggGcCCGCggcggcggaggacccGCGCGcCGCCg -3'
miRNA:   3'- -GCGa----CCGGGa-CaGGCG---------------CGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 153022 0.66 0.600132
Target:  5'- gGCggaguccgGGCCCgcgcggCgGCGCGCGguuggccggCGCCg -3'
miRNA:   3'- gCGa-------CCGGGaca---GgCGCGCGCa--------GCGG- -5'
5131 5' -63.5 NC_001798.1 + 150383 0.7 0.370741
Target:  5'- gCGCgGGCCCgg-CCGCGUccGCGcUCGCa -3'
miRNA:   3'- -GCGaCCGGGacaGGCGCG--CGC-AGCGg -5'
5131 5' -63.5 NC_001798.1 + 150251 0.75 0.194552
Target:  5'- cCGCgcccGGCCCUcccgacCCGCGCGCGUCGgUCg -3'
miRNA:   3'- -GCGa---CCGGGAca----GGCGCGCGCAGC-GG- -5'
5131 5' -63.5 NC_001798.1 + 150137 0.66 0.575205
Target:  5'- cCGCggGGCCCgaGUCCGaccCGCGCcucuuccgggggcggGcCGCCg -3'
miRNA:   3'- -GCGa-CCGGGa-CAGGC---GCGCG---------------CaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 149237 0.67 0.552408
Target:  5'- cCG-UGGCCCg---CGgGgGCGUCGCCg -3'
miRNA:   3'- -GCgACCGGGacagGCgCgCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 145723 0.66 0.609763
Target:  5'- aGCcccGGCCCcgGcCCGCGCccCGcCGCCa -3'
miRNA:   3'- gCGa--CCGGGa-CaGGCGCGc-GCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 145535 0.67 0.552408
Target:  5'- gCGCgcccccGCCCgg-CCGCcCGCGUCGCg -3'
miRNA:   3'- -GCGac----CGGGacaGGCGcGCGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 143812 0.66 0.571389
Target:  5'- ---aGGCCCgggCgGCGCGCGgccaGCCg -3'
miRNA:   3'- gcgaCCGGGacaGgCGCGCGCag--CGG- -5'
5131 5' -63.5 NC_001798.1 + 143294 0.68 0.461129
Target:  5'- aCGUaggGGCC--GUCCGCccccgGCGgGUCGCCg -3'
miRNA:   3'- -GCGa--CCGGgaCAGGCG-----CGCgCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 138892 0.67 0.561877
Target:  5'- aGCUGGUCg-GUCCGCuuGgGcCGCCc -3'
miRNA:   3'- gCGACCGGgaCAGGCGcgCgCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 137943 0.67 0.542988
Target:  5'- gGCc-GCCCgGUCCGcCGCGCGcUGCUc -3'
miRNA:   3'- gCGacCGGGaCAGGC-GCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 135533 0.76 0.153297
Target:  5'- cCGCcgGGCCCUcgaggcGUCCGUGCGCGcCGUa -3'
miRNA:   3'- -GCGa-CCGGGA------CAGGCGCGCGCaGCGg -5'
5131 5' -63.5 NC_001798.1 + 135322 0.69 0.418549
Target:  5'- uGCUGGagcgCCUGgugccggaCGCGUGCGaCGCCu -3'
miRNA:   3'- gCGACCg---GGACag------GCGCGCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 134895 0.68 0.469918
Target:  5'- gGCUGGCCCacGUuuaCCGUGC-CGgcCGCCg -3'
miRNA:   3'- gCGACCGGGa-CA---GGCGCGcGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 134431 1.11 0.00049
Target:  5'- cCGCUGGCCCUGUCCGCGCGCGUCGCCg -3'
miRNA:   3'- -GCGACCGGGACAGGCGCGCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 132133 0.66 0.580939
Target:  5'- gGC-GGCCCUGcgCCgccgggggccgGCGgGCGgggCGCCc -3'
miRNA:   3'- gCGaCCGGGACa-GG-----------CGCgCGCa--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.