Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5132 | 3' | -59.7 | NC_001798.1 | + | 134752 | 0.66 | 0.754293 |
Target: 5'- cGGC-GCUGGuCGCCCucuuCCgGCAgUGGCa -3' miRNA: 3'- -UCGaCGACCuGCGGGu---GG-CGUaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 150931 | 0.66 | 0.754293 |
Target: 5'- gGGCggGCgGGACGUaguCCACUGCAgagggaGACa -3' miRNA: 3'- -UCGa-CGaCCUGCG---GGUGGCGUag----CUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 3608 | 0.66 | 0.754293 |
Target: 5'- gAGCUGCUGu-UGCgCGCCGCGccCGAg -3' miRNA: 3'- -UCGACGACcuGCGgGUGGCGUa-GCUg -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 66943 | 0.66 | 0.754293 |
Target: 5'- gGGCUGCacGGAguCGUCCgACCGCgaGUCGGa -3' miRNA: 3'- -UCGACGa-CCU--GCGGG-UGGCG--UAGCUg -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 104908 | 0.65 | 0.762739 |
Target: 5'- uGGC-GCUGGcccacguACaGCCgGCCGCA-CGACu -3' miRNA: 3'- -UCGaCGACC-------UG-CGGgUGGCGUaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 23727 | 0.66 | 0.744811 |
Target: 5'- cGGCgggucgaGCUGGACGCCgaCGCgGCcucCGGCg -3' miRNA: 3'- -UCGa------CGACCUGCGG--GUGgCGua-GCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 8942 | 0.66 | 0.744811 |
Target: 5'- gAGCUGCggcggGGugG-CCGCCGgAccuuuaugcgccUCGGCg -3' miRNA: 3'- -UCGACGa----CCugCgGGUGGCgU------------AGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 92985 | 0.66 | 0.725567 |
Target: 5'- uGGCccGCgcGGcCGCCCACCugGCGuUCGACg -3' miRNA: 3'- -UCGa-CGa-CCuGCGGGUGG--CGU-AGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 41650 | 0.66 | 0.732342 |
Target: 5'- gAGgUGCUGGAgGgagcggaCCGcgagcauggcgugcCCGCAUCGACg -3' miRNA: 3'- -UCgACGACCUgCg------GGU--------------GGCGUAGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 109447 | 0.66 | 0.734269 |
Target: 5'- cGGCUGgaGGcGCGCCUcgggcaucuggugGCCGCGauccUCGAg -3' miRNA: 3'- -UCGACgaCC-UGCGGG-------------UGGCGU----AGCUg -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 2501 | 0.66 | 0.735232 |
Target: 5'- cGCcGCgGGGCGCggCgGCCGCggCGGCg -3' miRNA: 3'- uCGaCGaCCUGCG--GgUGGCGuaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 27509 | 0.66 | 0.735232 |
Target: 5'- aAGCcGCgcggGGGCGCCCGCgggaagGCAgccccgCGGCg -3' miRNA: 3'- -UCGaCGa---CCUGCGGGUGg-----CGUa-----GCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 105337 | 0.66 | 0.735232 |
Target: 5'- uGCUGCUcgaucGGGCGUauCCGgCGCucgauGUCGACg -3' miRNA: 3'- uCGACGA-----CCUGCG--GGUgGCG-----UAGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 137506 | 0.66 | 0.735232 |
Target: 5'- cGCgUGCUGuACGUCCGCCacgaacaggGCcgCGACg -3' miRNA: 3'- uCG-ACGACcUGCGGGUGG---------CGuaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 3947 | 0.66 | 0.735232 |
Target: 5'- uAGCgcGCguagaaGGCGCCggagGCCGCGUCGGCg -3' miRNA: 3'- -UCGa-CGac----CUGCGGg---UGGCGUAGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 26481 | 0.66 | 0.735232 |
Target: 5'- ---cGCUGGGCGUCgGCCGCGggcCGcGCg -3' miRNA: 3'- ucgaCGACCUGCGGgUGGCGUa--GC-UG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 131055 | 0.66 | 0.735232 |
Target: 5'- uAGC-GCgaGGucaccGCGCCCACCGCggCGuACa -3' miRNA: 3'- -UCGaCGa-CC-----UGCGGGUGGCGuaGC-UG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 34853 | 0.66 | 0.735232 |
Target: 5'- cGCcggGCgggGGACGCCUuCCGCc-CGGCg -3' miRNA: 3'- uCGa--CGa--CCUGCGGGuGGCGuaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 75479 | 0.66 | 0.741947 |
Target: 5'- cGGCccUGCUGGACuucaCCCugCGCAUgcugccccgcaaaaCGGCc -3' miRNA: 3'- -UCG--ACGACCUGc---GGGugGCGUA--------------GCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 81991 | 0.66 | 0.742902 |
Target: 5'- aAGgaGCggucguccccggGGGCGaCCGCCGCcgCGGCc -3' miRNA: 3'- -UCgaCGa-----------CCUGCgGGUGGCGuaGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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