miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 3' -59.7 NC_001798.1 + 68373 0.71 0.460924
Target:  5'- uGCgUGCgguaGGGCGCCC-CCGCAgaucCGGCu -3'
miRNA:   3'- uCG-ACGa---CCUGCGGGuGGCGUa---GCUG- -5'
5132 3' -59.7 NC_001798.1 + 69547 0.7 0.479329
Target:  5'- gGGCUGgUGGugGUuuCCACgGCAcucUCGGCc -3'
miRNA:   3'- -UCGACgACCugCG--GGUGgCGU---AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 70432 0.67 0.65622
Target:  5'- gGGCUGCUGG-UGCaCCGCaugGCggUGGCg -3'
miRNA:   3'- -UCGACGACCuGCG-GGUGg--CGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 75179 0.68 0.605953
Target:  5'- uGCUcgagacGCUGGGgGCCCGCCGCccccCGGa -3'
miRNA:   3'- uCGA------CGACCUgCGGGUGGCGua--GCUg -5'
5132 3' -59.7 NC_001798.1 + 75373 0.66 0.744811
Target:  5'- gGGCUGUUGGA-GCUCugCGuCAUCu-- -3'
miRNA:   3'- -UCGACGACCUgCGGGugGC-GUAGcug -5'
5132 3' -59.7 NC_001798.1 + 75479 0.66 0.741947
Target:  5'- cGGCccUGCUGGACuucaCCCugCGCAUgcugccccgcaaaaCGGCc -3'
miRNA:   3'- -UCG--ACGACCUGc---GGGugGCGUA--------------GCUG- -5'
5132 3' -59.7 NC_001798.1 + 76059 0.68 0.605953
Target:  5'- cGGCUGgaGGACgugcggauccagGCCCGCCGgG-CGAUc -3'
miRNA:   3'- -UCGACgaCCUG------------CGGGUGGCgUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 77603 0.67 0.706013
Target:  5'- cAGgaGCUGGgcaaggucaucgGCGCCacgcgaCGCCGCGcCGACg -3'
miRNA:   3'- -UCgaCGACC------------UGCGG------GUGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 78860 0.74 0.313839
Target:  5'- cGGCcGCcuggGGGCGCUCuuugauacucggcGCCGCGUCGACg -3'
miRNA:   3'- -UCGaCGa---CCUGCGGG-------------UGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 79946 0.73 0.351451
Target:  5'- cAGCUggGCUGGGCGUCCGgaGCggCGGCg -3'
miRNA:   3'- -UCGA--CGACCUGCGGGUggCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 80794 0.67 0.676251
Target:  5'- cGGCggGCcGGACGCCgCcCUGCG-CGACg -3'
miRNA:   3'- -UCGa-CGaCCUGCGG-GuGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 81991 0.66 0.742902
Target:  5'- aAGgaGCggucguccccggGGGCGaCCGCCGCcgCGGCc -3'
miRNA:   3'- -UCgaCGa-----------CCUGCgGGUGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 85389 0.69 0.575959
Target:  5'- cGC-GCUGGAcCGCCCcugucuggucuGCCGCAccaUCGAg -3'
miRNA:   3'- uCGaCGACCU-GCGGG-----------UGGCGU---AGCUg -5'
5132 3' -59.7 NC_001798.1 + 85946 0.69 0.556146
Target:  5'- cAGCUGCUGcACGCgCGCCGCcgCc-- -3'
miRNA:   3'- -UCGACGACcUGCGgGUGGCGuaGcug -5'
5132 3' -59.7 NC_001798.1 + 86097 0.78 0.177912
Target:  5'- cGGCUGCgcgccgccgcGGACGCCCGCCGCGccgCGGu -3'
miRNA:   3'- -UCGACGa---------CCUGCGGGUGGCGUa--GCUg -5'
5132 3' -59.7 NC_001798.1 + 87164 0.67 0.65622
Target:  5'- gGGCUGCUGccccGCGUgCAgCGCGggCGACg -3'
miRNA:   3'- -UCGACGACc---UGCGgGUgGCGUa-GCUG- -5'
5132 3' -59.7 NC_001798.1 + 88092 0.67 0.65622
Target:  5'- uAGCUcGCggaGGGCGgCCAgCCGCG-CGACc -3'
miRNA:   3'- -UCGA-CGa--CCUGCgGGU-GGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 92985 0.66 0.725567
Target:  5'- uGGCccGCgcGGcCGCCCACCugGCGuUCGACg -3'
miRNA:   3'- -UCGa-CGa-CCuGCGGGUGG--CGU-AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 95216 0.7 0.52585
Target:  5'- cAGcCUGCUGGGCggcaaaaacgcguGCCCGCUGCugaucuUUGACc -3'
miRNA:   3'- -UC-GACGACCUG-------------CGGGUGGCGu-----AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 96874 0.7 0.50759
Target:  5'- uGCgGCUGGACGCCaacgaGCUGCGaCGGu -3'
miRNA:   3'- uCGaCGACCUGCGGg----UGGCGUaGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.