miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 3' -59.7 NC_001798.1 + 27509 0.66 0.735232
Target:  5'- aAGCcGCgcggGGGCGCCCGCgggaagGCAgccccgCGGCg -3'
miRNA:   3'- -UCGaCGa---CCUGCGGGUGg-----CGUa-----GCUG- -5'
5132 3' -59.7 NC_001798.1 + 28107 0.68 0.636115
Target:  5'- uGGCUGCUGG-UGCCC-CagGCGgaCGACa -3'
miRNA:   3'- -UCGACGACCuGCGGGuGg-CGUa-GCUG- -5'
5132 3' -59.7 NC_001798.1 + 29408 0.7 0.50759
Target:  5'- cGGCgggGCgccggggGGACuCCCAuCUGCGUCGGCg -3'
miRNA:   3'- -UCGa--CGa------CCUGcGGGU-GGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 31387 0.7 0.498088
Target:  5'- cGGCggaggGCaGGACGCCCcCCGCga-GACa -3'
miRNA:   3'- -UCGa----CGaCCUGCGGGuGGCGuagCUG- -5'
5132 3' -59.7 NC_001798.1 + 32058 0.67 0.696141
Target:  5'- cGGCguccGC-GGGCGCCgCGCCccCGUCGGCg -3'
miRNA:   3'- -UCGa---CGaCCUGCGG-GUGGc-GUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 32244 0.68 0.626054
Target:  5'- gGGCUGgUGGgaGCGUCgCGuCCGCGUcCGGCg -3'
miRNA:   3'- -UCGACgACC--UGCGG-GU-GGCGUA-GCUG- -5'
5132 3' -59.7 NC_001798.1 + 32568 0.67 0.676251
Target:  5'- uGCUGC-GGGCcgcgGCCC-CCGCGUgGAg -3'
miRNA:   3'- uCGACGaCCUG----CGGGuGGCGUAgCUg -5'
5132 3' -59.7 NC_001798.1 + 34853 0.66 0.735232
Target:  5'- cGCcggGCgggGGACGCCUuCCGCc-CGGCg -3'
miRNA:   3'- uCGa--CGa--CCUGCGGGuGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 37486 0.66 0.744811
Target:  5'- gAGCUGUaccGGGCccaacgcgcgGCCCGCUguGCGUCGAg -3'
miRNA:   3'- -UCGACGa--CCUG----------CGGGUGG--CGUAGCUg -5'
5132 3' -59.7 NC_001798.1 + 41650 0.66 0.732342
Target:  5'- gAGgUGCUGGAgGgagcggaCCGcgagcauggcgugcCCGCAUCGACg -3'
miRNA:   3'- -UCgACGACCUgCg------GGU--------------GGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 42345 0.68 0.595927
Target:  5'- aGGCUGUggccgUGGGCGUacaCGcCCGUAUCGAUc -3'
miRNA:   3'- -UCGACG-----ACCUGCGg--GU-GGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 43075 0.71 0.442898
Target:  5'- gAGCgcgccggGCUcGGGCGCcgCCGCCGCGUCcGCg -3'
miRNA:   3'- -UCGa------CGA-CCUGCG--GGUGGCGUAGcUG- -5'
5132 3' -59.7 NC_001798.1 + 44221 0.66 0.744811
Target:  5'- cGCUGCcccagGGacauGCGCCCGacgaccgagCGCAUCGAUu -3'
miRNA:   3'- uCGACGa----CC----UGCGGGUg--------GCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 48361 0.66 0.744811
Target:  5'- cGGCcGCccgGGGcCGCCCcgcggggcguGCCGCcgCGACc -3'
miRNA:   3'- -UCGaCGa--CCU-GCGGG----------UGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 49403 0.67 0.665247
Target:  5'- gAGCUGC-GGGCGCgggaggagagcuaCCggACCGUGUUGGCa -3'
miRNA:   3'- -UCGACGaCCUGCG-------------GG--UGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 52484 0.67 0.696141
Target:  5'- uGGcCUGCggGGACGCgCGCCggcGCAgggaCGACg -3'
miRNA:   3'- -UC-GACGa-CCUGCGgGUGG---CGUa---GCUG- -5'
5132 3' -59.7 NC_001798.1 + 52564 0.66 0.715825
Target:  5'- cGGCUGCUGGGC-CUgGCCGaCA-CGGu -3'
miRNA:   3'- -UCGACGACCUGcGGgUGGC-GUaGCUg -5'
5132 3' -59.7 NC_001798.1 + 53598 0.79 0.140935
Target:  5'- aAGCUGCUGGugcGCGCCCcguucaagagcgggGCCGCcgCGGCc -3'
miRNA:   3'- -UCGACGACC---UGCGGG--------------UGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 56530 0.66 0.753349
Target:  5'- uGGCggUGCcgGGGCGCCCGCacgaugucugggaCGCGaCGGCc -3'
miRNA:   3'- -UCG--ACGa-CCUGCGGGUG-------------GCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 66943 0.66 0.754293
Target:  5'- gGGCUGCacGGAguCGUCCgACCGCgaGUCGGa -3'
miRNA:   3'- -UCGACGa-CCU--GCGGG-UGGCG--UAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.