Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5132 | 3' | -59.7 | NC_001798.1 | + | 3608 | 0.66 | 0.754293 |
Target: 5'- gAGCUGCUGu-UGCgCGCCGCGccCGAg -3' miRNA: 3'- -UCGACGACcuGCGgGUGGCGUa-GCUg -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 150931 | 0.66 | 0.754293 |
Target: 5'- gGGCggGCgGGACGUaguCCACUGCAgagggaGACa -3' miRNA: 3'- -UCGa-CGaCCUGCG---GGUGGCGUag----CUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 134752 | 0.66 | 0.754293 |
Target: 5'- cGGC-GCUGGuCGCCCucuuCCgGCAgUGGCa -3' miRNA: 3'- -UCGaCGACCuGCGGGu---GG-CGUaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 2248 | 0.66 | 0.754293 |
Target: 5'- aGGCgGC-GGGCGCgCCGCCGgGgggcggggCGGCg -3' miRNA: 3'- -UCGaCGaCCUGCG-GGUGGCgUa-------GCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 56530 | 0.66 | 0.753349 |
Target: 5'- uGGCggUGCcgGGGCGCCCGCacgaugucugggaCGCGaCGGCc -3' miRNA: 3'- -UCG--ACGa-CCUGCGGGUG-------------GCGUaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 44221 | 0.66 | 0.744811 |
Target: 5'- cGCUGCcccagGGacauGCGCCCGacgaccgagCGCAUCGAUu -3' miRNA: 3'- uCGACGa----CC----UGCGGGUg--------GCGUAGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 147056 | 0.66 | 0.744811 |
Target: 5'- cGGCcGgaGGG-GCCC-CCGCAccUCGGCg -3' miRNA: 3'- -UCGaCgaCCUgCGGGuGGCGU--AGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 75373 | 0.66 | 0.744811 |
Target: 5'- gGGCUGUUGGA-GCUCugCGuCAUCu-- -3' miRNA: 3'- -UCGACGACCUgCGGGugGC-GUAGcug -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 81991 | 0.66 | 0.742902 |
Target: 5'- aAGgaGCggucguccccggGGGCGaCCGCCGCcgCGGCc -3' miRNA: 3'- -UCgaCGa-----------CCUGCgGGUGGCGuaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 8942 | 0.66 | 0.744811 |
Target: 5'- gAGCUGCggcggGGugG-CCGCCGgAccuuuaugcgccUCGGCg -3' miRNA: 3'- -UCGACGa----CCugCgGGUGGCgU------------AGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 23727 | 0.66 | 0.744811 |
Target: 5'- cGGCgggucgaGCUGGACGCCgaCGCgGCcucCGGCg -3' miRNA: 3'- -UCGa------CGACCUGCGG--GUGgCGua-GCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 37486 | 0.66 | 0.744811 |
Target: 5'- gAGCUGUaccGGGCccaacgcgcgGCCCGCUguGCGUCGAg -3' miRNA: 3'- -UCGACGa--CCUG----------CGGGUGG--CGUAGCUg -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 48361 | 0.66 | 0.744811 |
Target: 5'- cGGCcGCccgGGGcCGCCCcgcggggcguGCCGCcgCGACc -3' miRNA: 3'- -UCGaCGa--CCU-GCGGG----------UGGCGuaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 117915 | 0.66 | 0.744811 |
Target: 5'- cGCUGcCUGGAgCGUCuCAUCGUggaaacgggAUCGGCg -3' miRNA: 3'- uCGAC-GACCU-GCGG-GUGGCG---------UAGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 32058 | 0.67 | 0.696141 |
Target: 5'- cGGCguccGC-GGGCGCCgCGCCccCGUCGGCg -3' miRNA: 3'- -UCGa---CGaCCUGCGG-GUGGc-GUAGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 100860 | 0.67 | 0.696141 |
Target: 5'- gGGCUGCUGGuccugGCCgGCCugGUcgCGGCc -3' miRNA: 3'- -UCGACGACCug---CGGgUGG--CGuaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 119014 | 0.67 | 0.696141 |
Target: 5'- cGCgGCUGGuCGCCCGggGCAUCcggGACc -3' miRNA: 3'- uCGaCGACCuGCGGGUggCGUAG---CUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 77603 | 0.67 | 0.706013 |
Target: 5'- cAGgaGCUGGgcaaggucaucgGCGCCacgcgaCGCCGCGcCGACg -3' miRNA: 3'- -UCgaCGACC------------UGCGG------GUGGCGUaGCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 26292 | 0.67 | 0.706013 |
Target: 5'- cGCUGgggcCUGGGCGCgCCGCUGCGgcccgucuacgUGGCg -3' miRNA: 3'- uCGAC----GACCUGCG-GGUGGCGUa----------GCUG- -5' |
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5132 | 3' | -59.7 | NC_001798.1 | + | 52484 | 0.67 | 0.696141 |
Target: 5'- uGGcCUGCggGGACGCgCGCCggcGCAgggaCGACg -3' miRNA: 3'- -UC-GACGa-CCUGCGgGUGG---CGUa---GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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