miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 3' -59.7 NC_001798.1 + 69547 0.7 0.479329
Target:  5'- gGGCUGgUGGugGUuuCCACgGCAcucUCGGCc -3'
miRNA:   3'- -UCGACgACCugCG--GGUGgCGU---AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 25438 0.7 0.480259
Target:  5'- cGCUGCgccgccccgccccccGGcggcGCGCCCGCCGCcuUCGGCc -3'
miRNA:   3'- uCGACGa--------------CC----UGCGGGUGGCGu-AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 97465 0.7 0.488667
Target:  5'- uGGCgcgGCUGGGgGCCgGCgGCG-CGACc -3'
miRNA:   3'- -UCGa--CGACCUgCGGgUGgCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 25125 0.7 0.498088
Target:  5'- gAGCcGCgcGGACGCCCcCCGCcccgCGGCc -3'
miRNA:   3'- -UCGaCGa-CCUGCGGGuGGCGua--GCUG- -5'
5132 3' -59.7 NC_001798.1 + 124128 0.7 0.498088
Target:  5'- cGCUG-UGGcGCGCCC-CCGCcgUGGCg -3'
miRNA:   3'- uCGACgACC-UGCGGGuGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 133103 0.7 0.498088
Target:  5'- uGCUGCUGGAgGCCUgucuUCGCGUCc-- -3'
miRNA:   3'- uCGACGACCUgCGGGu---GGCGUAGcug -5'
5132 3' -59.7 NC_001798.1 + 31387 0.7 0.498088
Target:  5'- cGGCggaggGCaGGACGCCCcCCGCga-GACa -3'
miRNA:   3'- -UCGa----CGaCCUGCGGGuGGCGuagCUG- -5'
5132 3' -59.7 NC_001798.1 + 150642 0.7 0.50759
Target:  5'- gGGCUGUcucgcgggGGGCGUCCugcccuccGCCGCcgCGGCg -3'
miRNA:   3'- -UCGACGa-------CCUGCGGG--------UGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 96874 0.7 0.50759
Target:  5'- uGCgGCUGGACGCCaacgaGCUGCGaCGGu -3'
miRNA:   3'- uCGaCGACCUGCGGg----UGGCGUaGCUg -5'
5132 3' -59.7 NC_001798.1 + 29408 0.7 0.50759
Target:  5'- cGGCgggGCgccggggGGACuCCCAuCUGCGUCGGCg -3'
miRNA:   3'- -UCGa--CGa------CCUGcGGGU-GGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 95216 0.7 0.52585
Target:  5'- cAGcCUGCUGGGCggcaaaaacgcguGCCCGCUGCugaucuUUGACc -3'
miRNA:   3'- -UC-GACGACCUG-------------CGGGUGGCGu-----AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 85946 0.69 0.556146
Target:  5'- cAGCUGCUGcACGCgCGCCGCcgCc-- -3'
miRNA:   3'- -UCGACGACcUGCGgGUGGCGuaGcug -5'
5132 3' -59.7 NC_001798.1 + 85389 0.69 0.575959
Target:  5'- cGC-GCUGGAcCGCCCcugucuggucuGCCGCAccaUCGAg -3'
miRNA:   3'- uCGaCGACCU-GCGGG-----------UGGCGU---AGCUg -5'
5132 3' -59.7 NC_001798.1 + 26188 0.68 0.595927
Target:  5'- cGGC-GCUGGACGgccgggCCGCCGCcUCGGg -3'
miRNA:   3'- -UCGaCGACCUGCg-----GGUGGCGuAGCUg -5'
5132 3' -59.7 NC_001798.1 + 135515 0.68 0.595927
Target:  5'- cGGC-GCgauccaGGACGCCCGCCGgGcccUCGAg -3'
miRNA:   3'- -UCGaCGa-----CCUGCGGGUGGCgU---AGCUg -5'
5132 3' -59.7 NC_001798.1 + 42345 0.68 0.595927
Target:  5'- aGGCUGUggccgUGGGCGUacaCGcCCGUAUCGAUc -3'
miRNA:   3'- -UCGACG-----ACCUGCGg--GU-GGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 75179 0.68 0.605953
Target:  5'- uGCUcgagacGCUGGGgGCCCGCCGCccccCGGa -3'
miRNA:   3'- uCGA------CGACCUgCGGGUGGCGua--GCUg -5'
5132 3' -59.7 NC_001798.1 + 76059 0.68 0.605953
Target:  5'- cGGCUGgaGGACgugcggauccagGCCCGCCGgG-CGAUc -3'
miRNA:   3'- -UCGACgaCCUG------------CGGGUGGCgUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 20774 0.68 0.615998
Target:  5'- gGGgaGCgacGGCGCCCGCCGCGUaGGu -3'
miRNA:   3'- -UCgaCGac-CUGCGGGUGGCGUAgCUg -5'
5132 3' -59.7 NC_001798.1 + 15534 0.68 0.617003
Target:  5'- cGCUGCUGGuguucgugugcccgGCCCcgggcguugccGCCGCcgCGGCg -3'
miRNA:   3'- uCGACGACCug------------CGGG-----------UGGCGuaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.