miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 3' -59.7 NC_001798.1 + 133642 1.08 0.001386
Target:  5'- gAGCUGCUGGACGCCCACCGCAUCGACc -3'
miRNA:   3'- -UCGACGACCUGCGGGUGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 116777 0.8 0.12003
Target:  5'- cGCUGCUGugcuccgcGGCGCCCgacgcgggcgccaacACCGCGUCGACg -3'
miRNA:   3'- uCGACGAC--------CUGCGGG---------------UGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 53598 0.79 0.140935
Target:  5'- aAGCUGCUGGugcGCGCCCcguucaagagcgggGCCGCcgCGGCc -3'
miRNA:   3'- -UCGACGACC---UGCGGG--------------UGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 2057 0.78 0.165127
Target:  5'- cAGCagGCaGGACaGCCCGCCGCGcUCGGCg -3'
miRNA:   3'- -UCGa-CGaCCUG-CGGGUGGCGU-AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 86097 0.78 0.177912
Target:  5'- cGGCUGCgcgccgccgcGGACGCCCGCCGCGccgCGGu -3'
miRNA:   3'- -UCGACGa---------CCUGCGGGUGGCGUa--GCUg -5'
5132 3' -59.7 NC_001798.1 + 128501 0.77 0.206137
Target:  5'- uGCgGCUGGACGCCCAgU-CGUCGGCg -3'
miRNA:   3'- uCGaCGACCUGCGGGUgGcGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 154521 0.75 0.267924
Target:  5'- gGGCUGCcuucccgcGGGCGCCC-CCGCG-CGGCu -3'
miRNA:   3'- -UCGACGa-------CCUGCGGGuGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 183 0.75 0.267924
Target:  5'- gGGCUGCcuucccgcGGGCGCCC-CCGCG-CGGCu -3'
miRNA:   3'- -UCGACGa-------CCUGCGGGuGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 106841 0.74 0.300627
Target:  5'- cAGCUGaUGGAgGCCCugggGCCGCG-CGACa -3'
miRNA:   3'- -UCGACgACCUgCGGG----UGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 78860 0.74 0.313839
Target:  5'- cGGCcGCcuggGGGCGCUCuuugauacucggcGCCGCGUCGACg -3'
miRNA:   3'- -UCGaCGa---CCUGCGGG-------------UGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 79946 0.73 0.351451
Target:  5'- cAGCUggGCUGGGCGUCCGgaGCggCGGCg -3'
miRNA:   3'- -UCGA--CGACCUGCGGGUggCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 121690 0.73 0.36705
Target:  5'- cGCgGCUGGGgGCcgcggcucCCGCCGCcgCGACg -3'
miRNA:   3'- uCGaCGACCUgCG--------GGUGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 97545 0.73 0.36705
Target:  5'- aGGCgugGCgcggGGACGCCCGCgaGCGagGACg -3'
miRNA:   3'- -UCGa--CGa---CCUGCGGGUGg-CGUagCUG- -5'
5132 3' -59.7 NC_001798.1 + 25819 0.72 0.383119
Target:  5'- gGGCUGCUGGccgGCGCCUgcgaccGCCGCcucAUCGuCg -3'
miRNA:   3'- -UCGACGACC---UGCGGG------UGGCG---UAGCuG- -5'
5132 3' -59.7 NC_001798.1 + 141110 0.72 0.408081
Target:  5'- cGCUacGCcgGGACGCcgCCGgCGCAUCGGCa -3'
miRNA:   3'- uCGA--CGa-CCUGCG--GGUgGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 109106 0.71 0.425277
Target:  5'- cGGC-GCUGGACGCCCuCCgGCGgguggcCGGCu -3'
miRNA:   3'- -UCGaCGACCUGCGGGuGG-CGUa-----GCUG- -5'
5132 3' -59.7 NC_001798.1 + 43075 0.71 0.442898
Target:  5'- gAGCgcgccggGCUcGGGCGCcgCCGCCGCGUCcGCg -3'
miRNA:   3'- -UCGa------CGA-CCUGCG--GGUGGCGUAGcUG- -5'
5132 3' -59.7 NC_001798.1 + 98569 0.71 0.451862
Target:  5'- gGGC-GCUGGugGCCgCGgUGgCGUCGGCg -3'
miRNA:   3'- -UCGaCGACCugCGG-GUgGC-GUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 68373 0.71 0.460924
Target:  5'- uGCgUGCgguaGGGCGCCC-CCGCAgaucCGGCu -3'
miRNA:   3'- uCG-ACGa---CCUGCGGGuGGCGUa---GCUG- -5'
5132 3' -59.7 NC_001798.1 + 96921 0.71 0.470081
Target:  5'- gGGCUGUcGGACGCCgC-CCGCGcgCGAg -3'
miRNA:   3'- -UCGACGaCCUGCGG-GuGGCGUa-GCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.