miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 3' -59.7 NC_001798.1 + 124515 0.66 0.715825
Target:  5'- gGGCUGC-GGGCGugucguCCCACacuCGCGUCuGGCu -3'
miRNA:   3'- -UCGACGaCCUGC------GGGUG---GCGUAG-CUG- -5'
5132 3' -59.7 NC_001798.1 + 124128 0.7 0.498088
Target:  5'- cGCUG-UGGcGCGCCC-CCGCcgUGGCg -3'
miRNA:   3'- uCGACgACC-UGCGGGuGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 121690 0.73 0.36705
Target:  5'- cGCgGCUGGGgGCcgcggcucCCGCCGCcgCGACg -3'
miRNA:   3'- uCGaCGACCUgCG--------GGUGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 119014 0.67 0.696141
Target:  5'- cGCgGCUGGuCGCCCGggGCAUCcggGACc -3'
miRNA:   3'- uCGaCGACCuGCGGGUggCGUAG---CUG- -5'
5132 3' -59.7 NC_001798.1 + 117915 0.66 0.744811
Target:  5'- cGCUGcCUGGAgCGUCuCAUCGUggaaacgggAUCGGCg -3'
miRNA:   3'- uCGAC-GACCU-GCGG-GUGGCG---------UAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 116777 0.8 0.12003
Target:  5'- cGCUGCUGugcuccgcGGCGCCCgacgcgggcgccaacACCGCGUCGACg -3'
miRNA:   3'- uCGACGAC--------CUGCGGG---------------UGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 109447 0.66 0.734269
Target:  5'- cGGCUGgaGGcGCGCCUcgggcaucuggugGCCGCGauccUCGAg -3'
miRNA:   3'- -UCGACgaCC-UGCGGG-------------UGGCGU----AGCUg -5'
5132 3' -59.7 NC_001798.1 + 109106 0.71 0.425277
Target:  5'- cGGC-GCUGGACGCCCuCCgGCGgguggcCGGCu -3'
miRNA:   3'- -UCGaCGACCUGCGGGuGG-CGUa-----GCUG- -5'
5132 3' -59.7 NC_001798.1 + 106841 0.74 0.300627
Target:  5'- cAGCUGaUGGAgGCCCugggGCCGCG-CGACa -3'
miRNA:   3'- -UCGACgACCUgCGGG----UGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 105337 0.66 0.735232
Target:  5'- uGCUGCUcgaucGGGCGUauCCGgCGCucgauGUCGACg -3'
miRNA:   3'- uCGACGA-----CCUGCG--GGUgGCG-----UAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 104908 0.65 0.762739
Target:  5'- uGGC-GCUGGcccacguACaGCCgGCCGCA-CGACu -3'
miRNA:   3'- -UCGaCGACC-------UG-CGGgUGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 102365 0.67 0.676251
Target:  5'- cGGCcGCcGGAaGCCCAcCCGCcuggcgGUCGGCg -3'
miRNA:   3'- -UCGaCGaCCUgCGGGU-GGCG------UAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 100860 0.67 0.696141
Target:  5'- gGGCUGCUGGuccugGCCgGCCugGUcgCGGCc -3'
miRNA:   3'- -UCGACGACCug---CGGgUGG--CGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 98569 0.71 0.451862
Target:  5'- gGGC-GCUGGugGCCgCGgUGgCGUCGGCg -3'
miRNA:   3'- -UCGaCGACCugCGG-GUgGC-GUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 97545 0.73 0.36705
Target:  5'- aGGCgugGCgcggGGACGCCCGCgaGCGagGACg -3'
miRNA:   3'- -UCGa--CGa---CCUGCGGGUGg-CGUagCUG- -5'
5132 3' -59.7 NC_001798.1 + 97465 0.7 0.488667
Target:  5'- uGGCgcgGCUGGGgGCCgGCgGCG-CGACc -3'
miRNA:   3'- -UCGa--CGACCUgCGGgUGgCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 96921 0.71 0.470081
Target:  5'- gGGCUGUcGGACGCCgC-CCGCGcgCGAg -3'
miRNA:   3'- -UCGACGaCCUGCGG-GuGGCGUa-GCUg -5'
5132 3' -59.7 NC_001798.1 + 96874 0.7 0.50759
Target:  5'- uGCgGCUGGACGCCaacgaGCUGCGaCGGu -3'
miRNA:   3'- uCGaCGACCUGCGGg----UGGCGUaGCUg -5'
5132 3' -59.7 NC_001798.1 + 95216 0.7 0.52585
Target:  5'- cAGcCUGCUGGGCggcaaaaacgcguGCCCGCUGCugaucuUUGACc -3'
miRNA:   3'- -UC-GACGACCUG-------------CGGGUGGCGu-----AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 92985 0.66 0.725567
Target:  5'- uGGCccGCgcGGcCGCCCACCugGCGuUCGACg -3'
miRNA:   3'- -UCGa-CGa-CCuGCGGGUGG--CGU-AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.