miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 3' -59.7 NC_001798.1 + 154521 0.75 0.267924
Target:  5'- gGGCUGCcuucccgcGGGCGCCC-CCGCG-CGGCu -3'
miRNA:   3'- -UCGACGa-------CCUGCGGGuGGCGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 153873 0.66 0.725567
Target:  5'- gGGggGCUGuuCGCCCACUcuGCGUCGuCg -3'
miRNA:   3'- -UCgaCGACcuGCGGGUGG--CGUAGCuG- -5'
5132 3' -59.7 NC_001798.1 + 151750 0.67 0.65622
Target:  5'- cGCUGCUGG-CGagCCACUGCAugUCGu- -3'
miRNA:   3'- uCGACGACCuGCg-GGUGGCGU--AGCug -5'
5132 3' -59.7 NC_001798.1 + 150931 0.66 0.754293
Target:  5'- gGGCggGCgGGACGUaguCCACUGCAgagggaGACa -3'
miRNA:   3'- -UCGa-CGaCCUGCG---GGUGGCGUag----CUG- -5'
5132 3' -59.7 NC_001798.1 + 150642 0.7 0.50759
Target:  5'- gGGCUGUcucgcgggGGGCGUCCugcccuccGCCGCcgCGGCg -3'
miRNA:   3'- -UCGACGa-------CCUGCGGG--------UGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 147056 0.66 0.744811
Target:  5'- cGGCcGgaGGG-GCCC-CCGCAccUCGGCg -3'
miRNA:   3'- -UCGaCgaCCUgCGGGuGGCGU--AGCUG- -5'
5132 3' -59.7 NC_001798.1 + 142338 0.65 0.762739
Target:  5'- cGCUGgUgGGACGCCCAUauguaCGCGUaccccuuUGACu -3'
miRNA:   3'- uCGACgA-CCUGCGGGUG-----GCGUA-------GCUG- -5'
5132 3' -59.7 NC_001798.1 + 141469 0.68 0.636115
Target:  5'- gAGCUGCU-GACcgGCUCGCCGCG-CGGg -3'
miRNA:   3'- -UCGACGAcCUG--CGGGUGGCGUaGCUg -5'
5132 3' -59.7 NC_001798.1 + 141110 0.72 0.408081
Target:  5'- cGCUacGCcgGGACGCcgCCGgCGCAUCGGCa -3'
miRNA:   3'- uCGA--CGa-CCUGCG--GGUgGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 138144 0.67 0.65622
Target:  5'- aAGCUGCUGcGgucGCGCCC-CCGgGUCcugggGGCg -3'
miRNA:   3'- -UCGACGAC-C---UGCGGGuGGCgUAG-----CUG- -5'
5132 3' -59.7 NC_001798.1 + 137506 0.66 0.735232
Target:  5'- cGCgUGCUGuACGUCCGCCacgaacaggGCcgCGACg -3'
miRNA:   3'- uCG-ACGACcUGCGGGUGG---------CGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 135515 0.68 0.595927
Target:  5'- cGGC-GCgauccaGGACGCCCGCCGgGcccUCGAg -3'
miRNA:   3'- -UCGaCGa-----CCUGCGGGUGGCgU---AGCUg -5'
5132 3' -59.7 NC_001798.1 + 135316 0.68 0.646173
Target:  5'- gGGCcgUGCUGGAgCGCCUgguGCCggacGCGUgCGACg -3'
miRNA:   3'- -UCG--ACGACCU-GCGGG---UGG----CGUA-GCUG- -5'
5132 3' -59.7 NC_001798.1 + 134752 0.66 0.754293
Target:  5'- cGGC-GCUGGuCGCCCucuuCCgGCAgUGGCa -3'
miRNA:   3'- -UCGaCGACCuGCGGGu---GG-CGUaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 133642 1.08 0.001386
Target:  5'- gAGCUGCUGGACGCCCACCGCAUCGACc -3'
miRNA:   3'- -UCGACGACCUGCGGGUGGCGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 133103 0.7 0.498088
Target:  5'- uGCUGCUGGAgGCCUgucuUCGCGUCc-- -3'
miRNA:   3'- uCGACGACCUgCGGGu---GGCGUAGcug -5'
5132 3' -59.7 NC_001798.1 + 131055 0.66 0.735232
Target:  5'- uAGC-GCgaGGucaccGCGCCCACCGCggCGuACa -3'
miRNA:   3'- -UCGaCGa-CC-----UGCGGGUGGCGuaGC-UG- -5'
5132 3' -59.7 NC_001798.1 + 128501 0.77 0.206137
Target:  5'- uGCgGCUGGACGCCCAgU-CGUCGGCg -3'
miRNA:   3'- uCGaCGACCUGCGGGUgGcGUAGCUG- -5'
5132 3' -59.7 NC_001798.1 + 127132 0.67 0.676251
Target:  5'- gGGUUug-GGAUGCCCGCCGCccUGACc -3'
miRNA:   3'- -UCGAcgaCCUGCGGGUGGCGuaGCUG- -5'
5132 3' -59.7 NC_001798.1 + 126852 0.68 0.646173
Target:  5'- cGGCcaGCUGG-CGuCCCugCGCG-CGACc -3'
miRNA:   3'- -UCGa-CGACCuGC-GGGugGCGUaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.