miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 5' -55.9 NC_001798.1 + 67710 0.67 0.863097
Target:  5'- -cGUgGGAgGCGgGGugGGCgGUACGa -3'
miRNA:   3'- gaCGgCCUgCGUgUCugUCGaCAUGC- -5'
5132 5' -55.9 NC_001798.1 + 70306 0.67 0.847533
Target:  5'- uUGUCGGGCGCGgCGGuCGGCccgGCGg -3'
miRNA:   3'- gACGGCCUGCGU-GUCuGUCGacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 70560 0.67 0.847533
Target:  5'- -cGCCGGGCuGCGCAccacGGCGGCccuggggccgGUGCGc -3'
miRNA:   3'- gaCGGCCUG-CGUGU----CUGUCGa---------CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 79864 0.69 0.787291
Target:  5'- -cGCCucgauGGACGCgGCGGcCgAGCUGUACGu -3'
miRNA:   3'- gaCGG-----CCUGCG-UGUCuG-UCGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 83633 0.68 0.839454
Target:  5'- -gGCCGGAgGCgggaGCGGAgGGgaUGUGCGg -3'
miRNA:   3'- gaCGGCCUgCG----UGUCUgUCg-ACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 85930 0.72 0.598318
Target:  5'- -aGCgCGGGgGCGgAGACAGCUGcUGCa -3'
miRNA:   3'- gaCG-GCCUgCGUgUCUGUCGAC-AUGc -5'
5132 5' -55.9 NC_001798.1 + 86272 0.71 0.690178
Target:  5'- -gGCgCGGGCGCACcGGCGgggaaugccuGCUGUGCa -3'
miRNA:   3'- gaCG-GCCUGCGUGuCUGU----------CGACAUGc -5'
5132 5' -55.9 NC_001798.1 + 86936 0.66 0.922275
Target:  5'- cCUGCCGucgcacGCGCGCAGGCuggAGCUcUGCc -3'
miRNA:   3'- -GACGGCc-----UGCGUGUCUG---UCGAcAUGc -5'
5132 5' -55.9 NC_001798.1 + 87183 0.69 0.768695
Target:  5'- -aGCgCGGGCG-ACGGGCGGCUGgcCa -3'
miRNA:   3'- gaCG-GCCUGCgUGUCUGUCGACauGc -5'
5132 5' -55.9 NC_001798.1 + 89576 0.69 0.785456
Target:  5'- -cGCCaGGCGCGC-GACGGCggaaagcuccagGUGCGg -3'
miRNA:   3'- gaCGGcCUGCGUGuCUGUCGa-----------CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 90889 0.68 0.831187
Target:  5'- -aGCUGGGCgGCGC--GCAuGCUGUACGc -3'
miRNA:   3'- gaCGGCCUG-CGUGucUGU-CGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 91262 0.66 0.891681
Target:  5'- uCUGCCGG-CgGCA-AGGCGGCgGUGCc -3'
miRNA:   3'- -GACGGCCuG-CGUgUCUGUCGaCAUGc -5'
5132 5' -55.9 NC_001798.1 + 92315 0.69 0.75921
Target:  5'- aCUGUCGG-CGCGCAG-CGGCgacGCGg -3'
miRNA:   3'- -GACGGCCuGCGUGUCuGUCGacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 93544 0.69 0.778058
Target:  5'- -cGCCGGcgaGCACcuGGCcauGCUGUGCGg -3'
miRNA:   3'- gaCGGCCug-CGUGu-CUGu--CGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 97594 0.67 0.847533
Target:  5'- -aGCCagGGGCGCAgGGGCcggagAGCUGggGCGa -3'
miRNA:   3'- gaCGG--CCUGCGUgUCUG-----UCGACa-UGC- -5'
5132 5' -55.9 NC_001798.1 + 97653 0.76 0.407093
Target:  5'- gUGCgGGA-GCGCcGGCGGCUGUACGc -3'
miRNA:   3'- gACGgCCUgCGUGuCUGUCGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 99324 0.67 0.877111
Target:  5'- aCUGCaucgucgaggaggUGGACGCGCGGuCGGUguacccGUACGa -3'
miRNA:   3'- -GACG-------------GCCUGCGUGUCuGUCGa-----CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 110342 0.67 0.862338
Target:  5'- gCUGCUGGugGaCACGGaugccacccaacaGCAGCUGg--- -3'
miRNA:   3'- -GACGGCCugC-GUGUC-------------UGUCGACaugc -5'
5132 5' -55.9 NC_001798.1 + 112780 0.67 0.877827
Target:  5'- -gGgCGGACGCACGGA----UGUGCGg -3'
miRNA:   3'- gaCgGCCUGCGUGUCUgucgACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 114857 0.69 0.749612
Target:  5'- -cGCCGacACGCGCGGGCGGCcgGUcgACGg -3'
miRNA:   3'- gaCGGCc-UGCGUGUCUGUCGa-CA--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.