miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 5' -55.9 NC_001798.1 + 31337 0.67 0.884866
Target:  5'- -gGCCGGcggggggcGCGCGCAGGCgcGGCggGUggGCGa -3'
miRNA:   3'- gaCGGCC--------UGCGUGUCUG--UCGa-CA--UGC- -5'
5132 5' -55.9 NC_001798.1 + 36064 0.68 0.831187
Target:  5'- gCUGCCGGAgGCuGCGGGC-GCgggGUAgGu -3'
miRNA:   3'- -GACGGCCUgCG-UGUCUGuCGa--CAUgC- -5'
5132 5' -55.9 NC_001798.1 + 36142 0.67 0.847533
Target:  5'- -cGCCGGugGgGCGcGGCGGCgGU-CGg -3'
miRNA:   3'- gaCGGCCugCgUGU-CUGUCGaCAuGC- -5'
5132 5' -55.9 NC_001798.1 + 36414 0.66 0.904623
Target:  5'- cCUGCCGGGCG---GGGCGGUgggGCGg -3'
miRNA:   3'- -GACGGCCUGCgugUCUGUCGacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 36493 0.71 0.690178
Target:  5'- -cGCCGGcGCGaCGCGGGCGGCcGgGCGg -3'
miRNA:   3'- gaCGGCC-UGC-GUGUCUGUCGaCaUGC- -5'
5132 5' -55.9 NC_001798.1 + 36532 0.66 0.904623
Target:  5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3'
miRNA:   3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5'
5132 5' -55.9 NC_001798.1 + 36574 0.66 0.904623
Target:  5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3'
miRNA:   3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5'
5132 5' -55.9 NC_001798.1 + 36616 0.66 0.904623
Target:  5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3'
miRNA:   3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5'
5132 5' -55.9 NC_001798.1 + 37488 0.67 0.863097
Target:  5'- gCUGuaCCGGgcccaACGCGCGGcCcGCUGUGCGu -3'
miRNA:   3'- -GAC--GGCC-----UGCGUGUCuGuCGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 41744 0.74 0.469216
Target:  5'- aCUGCUgacacagGGACGCGCauAGGCGGUUGUugGu -3'
miRNA:   3'- -GACGG-------CCUGCGUG--UCUGUCGACAugC- -5'
5132 5' -55.9 NC_001798.1 + 43776 0.75 0.442493
Target:  5'- -gGUCGGAcaCGCGCAGGCAGCUGcgaucguggGCGa -3'
miRNA:   3'- gaCGGCCU--GCGUGUCUGUCGACa--------UGC- -5'
5132 5' -55.9 NC_001798.1 + 46198 0.74 0.517118
Target:  5'- -cGUCGGcCGCGCgcaauacgcggagGGACGGCUGUAUGa -3'
miRNA:   3'- gaCGGCCuGCGUG-------------UCUGUCGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 48170 0.66 0.891681
Target:  5'- cCUGgCGGccACGCACGccCGGCUGgcgGCGg -3'
miRNA:   3'- -GACgGCC--UGCGUGUcuGUCGACa--UGC- -5'
5132 5' -55.9 NC_001798.1 + 52181 0.66 0.910744
Target:  5'- uUGCgGGGCGCGuccUGGACGuGCUG-GCGg -3'
miRNA:   3'- gACGgCCUGCGU---GUCUGU-CGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 53103 0.78 0.305117
Target:  5'- -cGCCGGGCGCGCGGcgcgagcucccuGCGGCUGgcGCGg -3'
miRNA:   3'- gaCGGCCUGCGUGUC------------UGUCGACa-UGC- -5'
5132 5' -55.9 NC_001798.1 + 53727 0.68 0.822738
Target:  5'- -aGCCGGccgaGCACGGACaccgcacugcGGCUGaGCGa -3'
miRNA:   3'- gaCGGCCug--CGUGUCUG----------UCGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 55712 0.66 0.910744
Target:  5'- -cGCCuGGACGCGuguCAGAgCGGCcagGUGCu -3'
miRNA:   3'- gaCGG-CCUGCGU---GUCU-GUCGa--CAUGc -5'
5132 5' -55.9 NC_001798.1 + 60003 0.72 0.598318
Target:  5'- -gGCCGGugGCGguGACAcacacGCUGgggACGu -3'
miRNA:   3'- gaCGGCCugCGUguCUGU-----CGACa--UGC- -5'
5132 5' -55.9 NC_001798.1 + 60224 0.66 0.902109
Target:  5'- gUGCUGGACGacgcgcccuccuCGCGGGCGGCaaaggugacgcagGUGCGc -3'
miRNA:   3'- gACGGCCUGC------------GUGUCUGUCGa------------CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 66582 0.67 0.877827
Target:  5'- uUGCucuccucgCGGGCGCACcGACAGaaGUACu -3'
miRNA:   3'- gACG--------GCCUGCGUGuCUGUCgaCAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.