Results 21 - 40 of 82 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 31337 | 0.67 | 0.884866 |
Target: 5'- -gGCCGGcggggggcGCGCGCAGGCgcGGCggGUggGCGa -3' miRNA: 3'- gaCGGCC--------UGCGUGUCUG--UCGa-CA--UGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 36064 | 0.68 | 0.831187 |
Target: 5'- gCUGCCGGAgGCuGCGGGC-GCgggGUAgGu -3' miRNA: 3'- -GACGGCCUgCG-UGUCUGuCGa--CAUgC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 36142 | 0.67 | 0.847533 |
Target: 5'- -cGCCGGugGgGCGcGGCGGCgGU-CGg -3' miRNA: 3'- gaCGGCCugCgUGU-CUGUCGaCAuGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 36414 | 0.66 | 0.904623 |
Target: 5'- cCUGCCGGGCG---GGGCGGUgggGCGg -3' miRNA: 3'- -GACGGCCUGCgugUCUGUCGacaUGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 36493 | 0.71 | 0.690178 |
Target: 5'- -cGCCGGcGCGaCGCGGGCGGCcGgGCGg -3' miRNA: 3'- gaCGGCC-UGC-GUGUCUGUCGaCaUGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 36532 | 0.66 | 0.904623 |
Target: 5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3' miRNA: 3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 36574 | 0.66 | 0.904623 |
Target: 5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3' miRNA: 3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 36616 | 0.66 | 0.904623 |
Target: 5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3' miRNA: 3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 37488 | 0.67 | 0.863097 |
Target: 5'- gCUGuaCCGGgcccaACGCGCGGcCcGCUGUGCGu -3' miRNA: 3'- -GAC--GGCC-----UGCGUGUCuGuCGACAUGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 41744 | 0.74 | 0.469216 |
Target: 5'- aCUGCUgacacagGGACGCGCauAGGCGGUUGUugGu -3' miRNA: 3'- -GACGG-------CCUGCGUG--UCUGUCGACAugC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 43776 | 0.75 | 0.442493 |
Target: 5'- -gGUCGGAcaCGCGCAGGCAGCUGcgaucguggGCGa -3' miRNA: 3'- gaCGGCCU--GCGUGUCUGUCGACa--------UGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 46198 | 0.74 | 0.517118 |
Target: 5'- -cGUCGGcCGCGCgcaauacgcggagGGACGGCUGUAUGa -3' miRNA: 3'- gaCGGCCuGCGUG-------------UCUGUCGACAUGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 48170 | 0.66 | 0.891681 |
Target: 5'- cCUGgCGGccACGCACGccCGGCUGgcgGCGg -3' miRNA: 3'- -GACgGCC--UGCGUGUcuGUCGACa--UGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 52181 | 0.66 | 0.910744 |
Target: 5'- uUGCgGGGCGCGuccUGGACGuGCUG-GCGg -3' miRNA: 3'- gACGgCCUGCGU---GUCUGU-CGACaUGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 53103 | 0.78 | 0.305117 |
Target: 5'- -cGCCGGGCGCGCGGcgcgagcucccuGCGGCUGgcGCGg -3' miRNA: 3'- gaCGGCCUGCGUGUC------------UGUCGACa-UGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 53727 | 0.68 | 0.822738 |
Target: 5'- -aGCCGGccgaGCACGGACaccgcacugcGGCUGaGCGa -3' miRNA: 3'- gaCGGCCug--CGUGUCUG----------UCGACaUGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 55712 | 0.66 | 0.910744 |
Target: 5'- -cGCCuGGACGCGuguCAGAgCGGCcagGUGCu -3' miRNA: 3'- gaCGG-CCUGCGU---GUCU-GUCGa--CAUGc -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 60003 | 0.72 | 0.598318 |
Target: 5'- -gGCCGGugGCGguGACAcacacGCUGgggACGu -3' miRNA: 3'- gaCGGCCugCGUguCUGU-----CGACa--UGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 60224 | 0.66 | 0.902109 |
Target: 5'- gUGCUGGACGacgcgcccuccuCGCGGGCGGCaaaggugacgcagGUGCGc -3' miRNA: 3'- gACGGCCUGC------------GUGUCUGUCGa------------CAUGC- -5' |
|||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 66582 | 0.67 | 0.877827 |
Target: 5'- uUGCucuccucgCGGGCGCACcGACAGaaGUACu -3' miRNA: 3'- gACG--------GCCUGCGUGuCUGUCgaCAUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home