Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5132 | 5' | -55.9 | NC_001798.1 | + | 67710 | 0.67 | 0.863097 |
Target: 5'- -cGUgGGAgGCGgGGugGGCgGUACGa -3' miRNA: 3'- gaCGgCCUgCGUgUCugUCGaCAUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 37488 | 0.67 | 0.863097 |
Target: 5'- gCUGuaCCGGgcccaACGCGCGGcCcGCUGUGCGu -3' miRNA: 3'- -GAC--GGCC-----UGCGUGUCuGuCGACAUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 110342 | 0.67 | 0.862338 |
Target: 5'- gCUGCUGGugGaCACGGaugccacccaacaGCAGCUGg--- -3' miRNA: 3'- -GACGGCCugC-GUGUC-------------UGUCGACaugc -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 22269 | 0.67 | 0.860814 |
Target: 5'- -cGCCGGGCGCuaaugagaugccgcGCGGGCGGagcgGCGg -3' miRNA: 3'- gaCGGCCUGCG--------------UGUCUGUCgacaUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 70560 | 0.67 | 0.847533 |
Target: 5'- -cGCCGGGCuGCGCAccacGGCGGCccuggggccgGUGCGc -3' miRNA: 3'- gaCGGCCUG-CGUGU----CUGUCGa---------CAUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 97594 | 0.67 | 0.847533 |
Target: 5'- -aGCCagGGGCGCAgGGGCcggagAGCUGggGCGa -3' miRNA: 3'- gaCGG--CCUGCGUgUCUG-----UCGACa-UGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 70306 | 0.67 | 0.847533 |
Target: 5'- uUGUCGGGCGCGgCGGuCGGCccgGCGg -3' miRNA: 3'- gACGGCCUGCGU-GUCuGUCGacaUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 17970 | 0.67 | 0.884866 |
Target: 5'- -gGuCCGGACGuCGgGGGgGGCUGcGCGg -3' miRNA: 3'- gaC-GGCCUGC-GUgUCUgUCGACaUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 36142 | 0.67 | 0.847533 |
Target: 5'- -cGCCGGugGgGCGcGGCGGCgGU-CGg -3' miRNA: 3'- gaCGGCCugCgUGU-CUGUCGaCAuGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 99324 | 0.67 | 0.877111 |
Target: 5'- aCUGCaucgucgaggaggUGGACGCGCGGuCGGUguacccGUACGa -3' miRNA: 3'- -GACG-------------GCCUGCGUGUCuGUCGa-----CAUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 12276 | 0.67 | 0.877827 |
Target: 5'- -gGCCGGugGCGCAGACccacaGGCc----- -3' miRNA: 3'- gaCGGCCugCGUGUCUG-----UCGacaugc -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 66582 | 0.67 | 0.877827 |
Target: 5'- uUGCucuccucgCGGGCGCACcGACAGaaGUACu -3' miRNA: 3'- gACG--------GCCUGCGUGuCUGUCgaCAUGc -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 112780 | 0.67 | 0.877827 |
Target: 5'- -gGgCGGACGCACGGA----UGUGCGg -3' miRNA: 3'- gaCgGCCUGCGUGUCUgucgACAUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 125774 | 0.67 | 0.877827 |
Target: 5'- -gGCCGaGACGCACcuccGGGCcgAGgUGUACa -3' miRNA: 3'- gaCGGC-CUGCGUG----UCUG--UCgACAUGc -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 137492 | 0.67 | 0.877827 |
Target: 5'- -gGCCGGG-GCAgAGccGCGuGCUGUACGu -3' miRNA: 3'- gaCGGCCUgCGUgUC--UGU-CGACAUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 23688 | 0.67 | 0.877827 |
Target: 5'- -gGCCGcGACGcCACGGGCcGCUucACGg -3' miRNA: 3'- gaCGGC-CUGC-GUGUCUGuCGAcaUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 121493 | 0.67 | 0.877827 |
Target: 5'- cCUGCCGGucGCGUGC-GACgcccaaGGCgUGUACGa -3' miRNA: 3'- -GACGGCC--UGCGUGuCUG------UCG-ACAUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 31337 | 0.67 | 0.884866 |
Target: 5'- -gGCCGGcggggggcGCGCGCAGGCgcGGCggGUggGCGa -3' miRNA: 3'- gaCGGCC--------UGCGUGUCUG--UCGa-CA--UGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 83633 | 0.68 | 0.839454 |
Target: 5'- -gGCCGGAgGCgggaGCGGAgGGgaUGUGCGg -3' miRNA: 3'- gaCGGCCUgCG----UGUCUgUCg-ACAUGC- -5' |
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5132 | 5' | -55.9 | NC_001798.1 | + | 90889 | 0.68 | 0.831187 |
Target: 5'- -aGCUGGGCgGCGC--GCAuGCUGUACGc -3' miRNA: 3'- gaCGGCCUG-CGUGucUGU-CGACAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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