miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 5' -55.9 NC_001798.1 + 4360 0.66 0.922275
Target:  5'- -cGCCGGcgggggGCGCGCcGGCGGCgGUGg- -3'
miRNA:   3'- gaCGGCC------UGCGUGuCUGUCGaCAUgc -5'
5132 5' -55.9 NC_001798.1 + 36532 0.66 0.904623
Target:  5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3'
miRNA:   3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5'
5132 5' -55.9 NC_001798.1 + 36414 0.66 0.904623
Target:  5'- cCUGCCGGGCG---GGGCGGUgggGCGg -3'
miRNA:   3'- -GACGGCCUGCgugUCUGUCGacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 12858 0.66 0.904623
Target:  5'- -cGuuGGugGUGuCGGACAGCUccgGCGg -3'
miRNA:   3'- gaCggCCugCGU-GUCUGUCGAca-UGC- -5'
5132 5' -55.9 NC_001798.1 + 60224 0.66 0.902109
Target:  5'- gUGCUGGACGacgcgcccuccuCGCGGGCGGCaaaggugacgcagGUGCGc -3'
miRNA:   3'- gACGGCCUGC------------GUGUCUGUCGa------------CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 143813 0.66 0.898268
Target:  5'- -gGcCCGGgcgGCGCGCGGcCAGCcGUugGa -3'
miRNA:   3'- gaC-GGCC---UGCGUGUCuGUCGaCAugC- -5'
5132 5' -55.9 NC_001798.1 + 12673 0.66 0.896316
Target:  5'- aCUGCCGGccaGCGCGCcgaugaucaggcccGGGuuGCUGgggGCGg -3'
miRNA:   3'- -GACGGCC---UGCGUG--------------UCUguCGACa--UGC- -5'
5132 5' -55.9 NC_001798.1 + 91262 0.66 0.891681
Target:  5'- uCUGCCGG-CgGCA-AGGCGGCgGUGCc -3'
miRNA:   3'- -GACGGCCuG-CGUgUCUGUCGaCAUGc -5'
5132 5' -55.9 NC_001798.1 + 48170 0.66 0.891681
Target:  5'- cCUGgCGGccACGCACGccCGGCUGgcgGCGg -3'
miRNA:   3'- -GACgGCC--UGCGUGUcuGUCGACa--UGC- -5'
5132 5' -55.9 NC_001798.1 + 36574 0.66 0.904623
Target:  5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3'
miRNA:   3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5'
5132 5' -55.9 NC_001798.1 + 36616 0.66 0.904623
Target:  5'- -gGCCGGGCggggGCGCGcGGCGGCcGgGCGg -3'
miRNA:   3'- gaCGGCCUG----CGUGU-CUGUCGaCaUGC- -5'
5132 5' -55.9 NC_001798.1 + 86936 0.66 0.922275
Target:  5'- cCUGCCGucgcacGCGCGCAGGCuggAGCUcUGCc -3'
miRNA:   3'- -GACGGCc-----UGCGUGUCUG---UCGAcAUGc -5'
5132 5' -55.9 NC_001798.1 + 116316 0.66 0.921721
Target:  5'- aCUGCCGGAUugacgcggggggGCACGagcccgucuacgcGGCGGC-GUGCa -3'
miRNA:   3'- -GACGGCCUG------------CGUGU-------------CUGUCGaCAUGc -5'
5132 5' -55.9 NC_001798.1 + 14353 0.66 0.916629
Target:  5'- uUGUauCGGACGCGgGGcCGGUggGUGCGg -3'
miRNA:   3'- gACG--GCCUGCGUgUCuGUCGa-CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 16848 0.66 0.916629
Target:  5'- gUGCauGACGC-CGGGCGGCaagGUGCc -3'
miRNA:   3'- gACGgcCUGCGuGUCUGUCGa--CAUGc -5'
5132 5' -55.9 NC_001798.1 + 1752 0.66 0.916629
Target:  5'- -cGCCGGccaGCGCACGGcGCA-CUGcACGg -3'
miRNA:   3'- gaCGGCC---UGCGUGUC-UGUcGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 55712 0.66 0.910744
Target:  5'- -cGCCuGGACGCGuguCAGAgCGGCcagGUGCu -3'
miRNA:   3'- gaCGG-CCUGCGU---GUCU-GUCGa--CAUGc -5'
5132 5' -55.9 NC_001798.1 + 52181 0.66 0.910744
Target:  5'- uUGCgGGGCGCGuccUGGACGuGCUG-GCGg -3'
miRNA:   3'- gACGgCCUGCGU---GUCUGU-CGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 25578 0.66 0.910744
Target:  5'- gCUGCCGGGCGaggaccuggcCGCGGGCcGCgccgGggGCGg -3'
miRNA:   3'- -GACGGCCUGC----------GUGUCUGuCGa---Ca-UGC- -5'
5132 5' -55.9 NC_001798.1 + 17970 0.67 0.884866
Target:  5'- -gGuCCGGACGuCGgGGGgGGCUGcGCGg -3'
miRNA:   3'- gaC-GGCCUGC-GUgUCUgUCGACaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.