miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 5' -55.9 NC_001798.1 + 133676 1.08 0.003384
Target:  5'- cCUGCCGGACGCACAGACAGCUGUACGc -3'
miRNA:   3'- -GACGGCCUGCGUGUCUGUCGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 53103 0.78 0.305117
Target:  5'- -cGCCGGGCGCGCGGcgcgagcucccuGCGGCUGgcGCGg -3'
miRNA:   3'- gaCGGCCUGCGUGUC------------UGUCGACa-UGC- -5'
5132 5' -55.9 NC_001798.1 + 97653 0.76 0.407093
Target:  5'- gUGCgGGA-GCGCcGGCGGCUGUACGc -3'
miRNA:   3'- gACGgCCUgCGUGuCUGUCGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 43776 0.75 0.442493
Target:  5'- -gGUCGGAcaCGCGCAGGCAGCUGcgaucguggGCGa -3'
miRNA:   3'- gaCGGCCU--GCGUGUCUGUCGACa--------UGC- -5'
5132 5' -55.9 NC_001798.1 + 41744 0.74 0.469216
Target:  5'- aCUGCUgacacagGGACGCGCauAGGCGGUUGUugGu -3'
miRNA:   3'- -GACGG-------CCUGCGUG--UCUGUCGACAugC- -5'
5132 5' -55.9 NC_001798.1 + 46198 0.74 0.517118
Target:  5'- -cGUCGGcCGCGCgcaauacgcggagGGACGGCUGUAUGa -3'
miRNA:   3'- gaCGGCCuGCGUG-------------UCUGUCGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 23955 0.74 0.518097
Target:  5'- -aGCUGGGCGaCGCGGcGCAGCaGUACGc -3'
miRNA:   3'- gaCGGCCUGC-GUGUC-UGUCGaCAUGC- -5'
5132 5' -55.9 NC_001798.1 + 25748 0.73 0.557799
Target:  5'- -cGCUGGGCGCGCAGgGCGuGCUGcUGCu -3'
miRNA:   3'- gaCGGCCUGCGUGUC-UGU-CGAC-AUGc -5'
5132 5' -55.9 NC_001798.1 + 85930 0.72 0.598318
Target:  5'- -aGCgCGGGgGCGgAGACAGCUGcUGCa -3'
miRNA:   3'- gaCG-GCCUgCGUgUCUGUCGAC-AUGc -5'
5132 5' -55.9 NC_001798.1 + 148279 0.72 0.598318
Target:  5'- -gGgCGGGCGUgGCGGGCAGgUGUGCGg -3'
miRNA:   3'- gaCgGCCUGCG-UGUCUGUCgACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 60003 0.72 0.598318
Target:  5'- -gGCCGGugGCGguGACAcacacGCUGgggACGu -3'
miRNA:   3'- gaCGGCCugCGUguCUGU-----CGACa--UGC- -5'
5132 5' -55.9 NC_001798.1 + 148386 0.72 0.598318
Target:  5'- -gGgCGGGCGUgGCGGGCAGgUGUGCGg -3'
miRNA:   3'- gaCgGCCUGCG-UGUCUGUCgACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 122070 0.72 0.608527
Target:  5'- -cGUCGGACGCGgAGGCGGUgcugGCGg -3'
miRNA:   3'- gaCGGCCUGCGUgUCUGUCGaca-UGC- -5'
5132 5' -55.9 NC_001798.1 + 1533 0.72 0.618754
Target:  5'- -cGCCGGGaGCACGGcGCGGCgGUACu -3'
miRNA:   3'- gaCGGCCUgCGUGUC-UGUCGaCAUGc -5'
5132 5' -55.9 NC_001798.1 + 31141 0.72 0.628991
Target:  5'- -cGCCccGGCGCGgGGGCGGCgGUGCGg -3'
miRNA:   3'- gaCGGc-CUGCGUgUCUGUCGaCAUGC- -5'
5132 5' -55.9 NC_001798.1 + 117662 0.72 0.628991
Target:  5'- cCUGCaacccgcggGGACGCGCGGccgGCGGCgUGUACGc -3'
miRNA:   3'- -GACGg--------CCUGCGUGUC---UGUCG-ACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 20333 0.72 0.628991
Target:  5'- -cGCaccaGGugGCGCAGGCGGUUG-GCGc -3'
miRNA:   3'- gaCGg---CCugCGUGUCUGUCGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 138457 0.71 0.63923
Target:  5'- uUGaCGGACGCgguguugcGCAGACGGCagaUGUGCGc -3'
miRNA:   3'- gACgGCCUGCG--------UGUCUGUCG---ACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 135336 0.71 0.673953
Target:  5'- gUGCCGGACGCgugcgACGccugccccgcgcuccGGCAGCUGcucgGCGg -3'
miRNA:   3'- gACGGCCUGCG-----UGU---------------CUGUCGACa---UGC- -5'
5132 5' -55.9 NC_001798.1 + 154048 0.71 0.68005
Target:  5'- -cGCCGGG-GCGCGGcACGGCUGgaGCGc -3'
miRNA:   3'- gaCGGCCUgCGUGUC-UGUCGACa-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.