miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 5' -55.9 NC_001798.1 + 1533 0.72 0.618754
Target:  5'- -cGCCGGGaGCACGGcGCGGCgGUACu -3'
miRNA:   3'- gaCGGCCUgCGUGUC-UGUCGaCAUGc -5'
5132 5' -55.9 NC_001798.1 + 1752 0.66 0.916629
Target:  5'- -cGCCGGccaGCGCACGGcGCA-CUGcACGg -3'
miRNA:   3'- gaCGGCC---UGCGUGUC-UGUcGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 2949 0.7 0.700257
Target:  5'- -aGCCaGGCGCGCAGGCggGGCgcgucggcGUGCGg -3'
miRNA:   3'- gaCGGcCUGCGUGUCUG--UCGa-------CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 4218 0.69 0.796384
Target:  5'- gCUGgCGGGgGCGCGGGCGGCgucGU-CGu -3'
miRNA:   3'- -GACgGCCUgCGUGUCUGUCGa--CAuGC- -5'
5132 5' -55.9 NC_001798.1 + 4360 0.66 0.922275
Target:  5'- -cGCCGGcgggggGCGCGCcGGCGGCgGUGg- -3'
miRNA:   3'- gaCGGCC------UGCGUGuCUGUCGaCAUgc -5'
5132 5' -55.9 NC_001798.1 + 12276 0.67 0.877827
Target:  5'- -gGCCGGugGCGCAGACccacaGGCc----- -3'
miRNA:   3'- gaCGGCCugCGUGUCUG-----UCGacaugc -5'
5132 5' -55.9 NC_001798.1 + 12673 0.66 0.896316
Target:  5'- aCUGCCGGccaGCGCGCcgaugaucaggcccGGGuuGCUGgggGCGg -3'
miRNA:   3'- -GACGGCC---UGCGUG--------------UCUguCGACa--UGC- -5'
5132 5' -55.9 NC_001798.1 + 12858 0.66 0.904623
Target:  5'- -cGuuGGugGUGuCGGACAGCUccgGCGg -3'
miRNA:   3'- gaCggCCugCGU-GUCUGUCGAca-UGC- -5'
5132 5' -55.9 NC_001798.1 + 14353 0.66 0.916629
Target:  5'- uUGUauCGGACGCGgGGcCGGUggGUGCGg -3'
miRNA:   3'- gACG--GCCUGCGUgUCuGUCGa-CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 15059 0.68 0.805329
Target:  5'- -gGCCcgGGGCGCGCGGGgGGUgguuUGUugGg -3'
miRNA:   3'- gaCGG--CCUGCGUGUCUgUCG----ACAugC- -5'
5132 5' -55.9 NC_001798.1 + 16848 0.66 0.916629
Target:  5'- gUGCauGACGC-CGGGCGGCaagGUGCc -3'
miRNA:   3'- gACGgcCUGCGuGUCUGUCGa--CAUGc -5'
5132 5' -55.9 NC_001798.1 + 17970 0.67 0.884866
Target:  5'- -gGuCCGGACGuCGgGGGgGGCUGcGCGg -3'
miRNA:   3'- gaC-GGCCUGC-GUgUCUgUCGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 20333 0.72 0.628991
Target:  5'- -cGCaccaGGugGCGCAGGCGGUUG-GCGc -3'
miRNA:   3'- gaCGg---CCugCGUGUCUGUCGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 22269 0.67 0.860814
Target:  5'- -cGCCGGGCGCuaaugagaugccgcGCGGGCGGagcgGCGg -3'
miRNA:   3'- gaCGGCCUGCG--------------UGUCUGUCgacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 23688 0.67 0.877827
Target:  5'- -gGCCGcGACGcCACGGGCcGCUucACGg -3'
miRNA:   3'- gaCGGC-CUGC-GUGUCUGuCGAcaUGC- -5'
5132 5' -55.9 NC_001798.1 + 23955 0.74 0.518097
Target:  5'- -aGCUGGGCGaCGCGGcGCAGCaGUACGc -3'
miRNA:   3'- gaCGGCCUGC-GUGUC-UGUCGaCAUGC- -5'
5132 5' -55.9 NC_001798.1 + 25578 0.66 0.910744
Target:  5'- gCUGCCGGGCGaggaccuggcCGCGGGCcGCgccgGggGCGg -3'
miRNA:   3'- -GACGGCCUGC----------GUGUCUGuCGa---Ca-UGC- -5'
5132 5' -55.9 NC_001798.1 + 25748 0.73 0.557799
Target:  5'- -cGCUGGGCGCGCAGgGCGuGCUGcUGCu -3'
miRNA:   3'- gaCGGCCUGCGUGUC-UGU-CGAC-AUGc -5'
5132 5' -55.9 NC_001798.1 + 26514 0.68 0.822738
Target:  5'- gUGCUGGcCGCgGCGGGCGGCg--GCGu -3'
miRNA:   3'- gACGGCCuGCG-UGUCUGUCGacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 31141 0.72 0.628991
Target:  5'- -cGCCccGGCGCGgGGGCGGCgGUGCGg -3'
miRNA:   3'- gaCGGc-CUGCGUgUCUGUCGaCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.