miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 5' -55.9 NC_001798.1 + 154072 0.7 0.710279
Target:  5'- -nGCCGGG-GCGCGGcACGGCUGgaGCGc -3'
miRNA:   3'- gaCGGCCUgCGUGUC-UGUCGACa-UGC- -5'
5132 5' -55.9 NC_001798.1 + 154048 0.71 0.68005
Target:  5'- -cGCCGGG-GCGCGGcACGGCUGgaGCGc -3'
miRNA:   3'- gaCGGCCUgCGUGUC-UGUCGACa-UGC- -5'
5132 5' -55.9 NC_001798.1 + 151162 0.69 0.778058
Target:  5'- gUGCCGGGC-CACGGGgGGgUGgGCGa -3'
miRNA:   3'- gACGGCCUGcGUGUCUgUCgACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 150444 0.69 0.796384
Target:  5'- aCU-CCGGACGCGCGgggcGACGGCcGcGCGg -3'
miRNA:   3'- -GAcGGCCUGCGUGU----CUGUCGaCaUGC- -5'
5132 5' -55.9 NC_001798.1 + 148386 0.72 0.598318
Target:  5'- -gGgCGGGCGUgGCGGGCAGgUGUGCGg -3'
miRNA:   3'- gaCgGCCUGCG-UGUCUGUCgACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 148279 0.72 0.598318
Target:  5'- -gGgCGGGCGUgGCGGGCAGgUGUGCGg -3'
miRNA:   3'- gaCgGCCUGCG-UGUCUGUCgACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 143813 0.66 0.898268
Target:  5'- -gGcCCGGgcgGCGCGCGGcCAGCcGUugGa -3'
miRNA:   3'- gaC-GGCC---UGCGUGUCuGUCGaCAugC- -5'
5132 5' -55.9 NC_001798.1 + 142133 0.68 0.805329
Target:  5'- gCUGCCGGACGC--GGcACAGgUgGUGCa -3'
miRNA:   3'- -GACGGCCUGCGugUC-UGUCgA-CAUGc -5'
5132 5' -55.9 NC_001798.1 + 141266 0.71 0.690178
Target:  5'- -gGCUGGACGaACAG-CAGCUGgACGu -3'
miRNA:   3'- gaCGGCCUGCgUGUCuGUCGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 139331 0.68 0.822738
Target:  5'- -cGCCGG-CGCcCGcGCGcGCUGUGCGg -3'
miRNA:   3'- gaCGGCCuGCGuGUcUGU-CGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 138457 0.71 0.63923
Target:  5'- uUGaCGGACGCgguguugcGCAGACGGCagaUGUGCGc -3'
miRNA:   3'- gACgGCCUGCG--------UGUCUGUCG---ACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 137492 0.67 0.877827
Target:  5'- -gGCCGGG-GCAgAGccGCGuGCUGUACGu -3'
miRNA:   3'- gaCGGCCUgCGUgUC--UGU-CGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 135336 0.71 0.673953
Target:  5'- gUGCCGGACGCgugcgACGccugccccgcgcuccGGCAGCUGcucgGCGg -3'
miRNA:   3'- gACGGCCUGCG-----UGU---------------CUGUCGACa---UGC- -5'
5132 5' -55.9 NC_001798.1 + 133676 1.08 0.003384
Target:  5'- cCUGCCGGACGCACAGACAGCUGUACGc -3'
miRNA:   3'- -GACGGCCUGCGUGUCUGUCGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 125774 0.67 0.877827
Target:  5'- -gGCCGaGACGCACcuccGGGCcgAGgUGUACa -3'
miRNA:   3'- gaCGGC-CUGCGUG----UCUG--UCgACAUGc -5'
5132 5' -55.9 NC_001798.1 + 125708 0.68 0.831187
Target:  5'- -cGUCGGGCGCGCgcggGGGCGGCgagAUGa -3'
miRNA:   3'- gaCGGCCUGCGUG----UCUGUCGacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 122070 0.72 0.608527
Target:  5'- -cGUCGGACGCGgAGGCGGUgcugGCGg -3'
miRNA:   3'- gaCGGCCUGCGUgUCUGUCGaca-UGC- -5'
5132 5' -55.9 NC_001798.1 + 121493 0.67 0.877827
Target:  5'- cCUGCCGGucGCGUGC-GACgcccaaGGCgUGUACGa -3'
miRNA:   3'- -GACGGCC--UGCGUGuCUG------UCG-ACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 118616 0.68 0.822738
Target:  5'- aUGCCGcGGCGCu---GCAGCgGUGCGa -3'
miRNA:   3'- gACGGC-CUGCGugucUGUCGaCAUGC- -5'
5132 5' -55.9 NC_001798.1 + 117662 0.72 0.628991
Target:  5'- cCUGCaacccgcggGGACGCGCGGccgGCGGCgUGUACGc -3'
miRNA:   3'- -GACGg--------CCUGCGUGUC---UGUCG-ACAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.