miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 5' -55.9 NC_001798.1 + 90889 0.68 0.831187
Target:  5'- -aGCUGGGCgGCGC--GCAuGCUGUACGc -3'
miRNA:   3'- gaCGGCCUG-CGUGucUGU-CGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 125708 0.68 0.831187
Target:  5'- -cGUCGGGCGCGCgcggGGGCGGCgagAUGa -3'
miRNA:   3'- gaCGGCCUGCGUG----UCUGUCGacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 118616 0.68 0.822738
Target:  5'- aUGCCGcGGCGCu---GCAGCgGUGCGa -3'
miRNA:   3'- gACGGC-CUGCGugucUGUCGaCAUGC- -5'
5132 5' -55.9 NC_001798.1 + 53727 0.68 0.822738
Target:  5'- -aGCCGGccgaGCACGGACaccgcacugcGGCUGaGCGa -3'
miRNA:   3'- gaCGGCCug--CGUGUCUG----------UCGACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 26514 0.68 0.822738
Target:  5'- gUGCUGGcCGCgGCGGGCGGCg--GCGu -3'
miRNA:   3'- gACGGCCuGCG-UGUCUGUCGacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 139331 0.68 0.822738
Target:  5'- -cGCCGG-CGCcCGcGCGcGCUGUGCGg -3'
miRNA:   3'- gaCGGCCuGCGuGUcUGU-CGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 15059 0.68 0.805329
Target:  5'- -gGCCcgGGGCGCGCGGGgGGUgguuUGUugGg -3'
miRNA:   3'- gaCGG--CCUGCGUGUCUgUCG----ACAugC- -5'
5132 5' -55.9 NC_001798.1 + 142133 0.68 0.805329
Target:  5'- gCUGCCGGACGC--GGcACAGgUgGUGCa -3'
miRNA:   3'- -GACGGCCUGCGugUC-UGUCgA-CAUGc -5'
5132 5' -55.9 NC_001798.1 + 150444 0.69 0.796384
Target:  5'- aCU-CCGGACGCGCGgggcGACGGCcGcGCGg -3'
miRNA:   3'- -GAcGGCCUGCGUGU----CUGUCGaCaUGC- -5'
5132 5' -55.9 NC_001798.1 + 4218 0.69 0.796384
Target:  5'- gCUGgCGGGgGCGCGGGCGGCgucGU-CGu -3'
miRNA:   3'- -GACgGCCUgCGUGUCUGUCGa--CAuGC- -5'
5132 5' -55.9 NC_001798.1 + 79864 0.69 0.787291
Target:  5'- -cGCCucgauGGACGCgGCGGcCgAGCUGUACGu -3'
miRNA:   3'- gaCGG-----CCUGCG-UGUCuG-UCGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 89576 0.69 0.785456
Target:  5'- -cGCCaGGCGCGC-GACGGCggaaagcuccagGUGCGg -3'
miRNA:   3'- gaCGGcCUGCGUGuCUGUCGa-----------CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 151162 0.69 0.778058
Target:  5'- gUGCCGGGC-CACGGGgGGgUGgGCGa -3'
miRNA:   3'- gACGGCCUGcGUGUCUgUCgACaUGC- -5'
5132 5' -55.9 NC_001798.1 + 93544 0.69 0.778058
Target:  5'- -cGCCGGcgaGCACcuGGCcauGCUGUGCGg -3'
miRNA:   3'- gaCGGCCug-CGUGu-CUGu--CGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 87183 0.69 0.768695
Target:  5'- -aGCgCGGGCG-ACGGGCGGCUGgcCa -3'
miRNA:   3'- gaCG-GCCUGCgUGUCUGUCGACauGc -5'
5132 5' -55.9 NC_001798.1 + 92315 0.69 0.75921
Target:  5'- aCUGUCGG-CGCGCAG-CGGCgacGCGg -3'
miRNA:   3'- -GACGGCCuGCGUGUCuGUCGacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 114857 0.69 0.749612
Target:  5'- -cGCCGacACGCGCGGGCGGCcgGUcgACGg -3'
miRNA:   3'- gaCGGCc-UGCGUGUCUGUCGa-CA--UGC- -5'
5132 5' -55.9 NC_001798.1 + 154072 0.7 0.710279
Target:  5'- -nGCCGGG-GCGCGGcACGGCUGgaGCGc -3'
miRNA:   3'- gaCGGCCUgCGUGUC-UGUCGACa-UGC- -5'
5132 5' -55.9 NC_001798.1 + 2949 0.7 0.700257
Target:  5'- -aGCCaGGCGCGCAGGCggGGCgcgucggcGUGCGg -3'
miRNA:   3'- gaCGGcCUGCGUGUCUG--UCGa-------CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 86272 0.71 0.690178
Target:  5'- -gGCgCGGGCGCACcGGCGgggaaugccuGCUGUGCa -3'
miRNA:   3'- gaCG-GCCUGCGUGuCUGU----------CGACAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.