miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5132 5' -55.9 NC_001798.1 + 31337 0.67 0.884866
Target:  5'- -gGCCGGcggggggcGCGCGCAGGCgcGGCggGUggGCGa -3'
miRNA:   3'- gaCGGCC--------UGCGUGUCUG--UCGa-CA--UGC- -5'
5132 5' -55.9 NC_001798.1 + 12276 0.67 0.877827
Target:  5'- -gGCCGGugGCGCAGACccacaGGCc----- -3'
miRNA:   3'- gaCGGCCugCGUGUCUG-----UCGacaugc -5'
5132 5' -55.9 NC_001798.1 + 66582 0.67 0.877827
Target:  5'- uUGCucuccucgCGGGCGCACcGACAGaaGUACu -3'
miRNA:   3'- gACG--------GCCUGCGUGuCUGUCgaCAUGc -5'
5132 5' -55.9 NC_001798.1 + 112780 0.67 0.877827
Target:  5'- -gGgCGGACGCACGGA----UGUGCGg -3'
miRNA:   3'- gaCgGCCUGCGUGUCUgucgACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 125774 0.67 0.877827
Target:  5'- -gGCCGaGACGCACcuccGGGCcgAGgUGUACa -3'
miRNA:   3'- gaCGGC-CUGCGUG----UCUG--UCgACAUGc -5'
5132 5' -55.9 NC_001798.1 + 137492 0.67 0.877827
Target:  5'- -gGCCGGG-GCAgAGccGCGuGCUGUACGu -3'
miRNA:   3'- gaCGGCCUgCGUgUC--UGU-CGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 23688 0.67 0.877827
Target:  5'- -gGCCGcGACGcCACGGGCcGCUucACGg -3'
miRNA:   3'- gaCGGC-CUGC-GUGUCUGuCGAcaUGC- -5'
5132 5' -55.9 NC_001798.1 + 121493 0.67 0.877827
Target:  5'- cCUGCCGGucGCGUGC-GACgcccaaGGCgUGUACGa -3'
miRNA:   3'- -GACGGCC--UGCGUGuCUG------UCG-ACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 99324 0.67 0.877111
Target:  5'- aCUGCaucgucgaggaggUGGACGCGCGGuCGGUguacccGUACGa -3'
miRNA:   3'- -GACG-------------GCCUGCGUGUCuGUCGa-----CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 116761 0.67 0.870569
Target:  5'- -gGCC-GACGCACGacGGCGcuGCUGUGCu -3'
miRNA:   3'- gaCGGcCUGCGUGU--CUGU--CGACAUGc -5'
5132 5' -55.9 NC_001798.1 + 37488 0.67 0.863097
Target:  5'- gCUGuaCCGGgcccaACGCGCGGcCcGCUGUGCGu -3'
miRNA:   3'- -GAC--GGCC-----UGCGUGUCuGuCGACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 67710 0.67 0.863097
Target:  5'- -cGUgGGAgGCGgGGugGGCgGUACGa -3'
miRNA:   3'- gaCGgCCUgCGUgUCugUCGaCAUGC- -5'
5132 5' -55.9 NC_001798.1 + 110342 0.67 0.862338
Target:  5'- gCUGCUGGugGaCACGGaugccacccaacaGCAGCUGg--- -3'
miRNA:   3'- -GACGGCCugC-GUGUC-------------UGUCGACaugc -5'
5132 5' -55.9 NC_001798.1 + 22269 0.67 0.860814
Target:  5'- -cGCCGGGCGCuaaugagaugccgcGCGGGCGGagcgGCGg -3'
miRNA:   3'- gaCGGCCUGCG--------------UGUCUGUCgacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 36142 0.67 0.847533
Target:  5'- -cGCCGGugGgGCGcGGCGGCgGU-CGg -3'
miRNA:   3'- gaCGGCCugCgUGU-CUGUCGaCAuGC- -5'
5132 5' -55.9 NC_001798.1 + 70306 0.67 0.847533
Target:  5'- uUGUCGGGCGCGgCGGuCGGCccgGCGg -3'
miRNA:   3'- gACGGCCUGCGU-GUCuGUCGacaUGC- -5'
5132 5' -55.9 NC_001798.1 + 97594 0.67 0.847533
Target:  5'- -aGCCagGGGCGCAgGGGCcggagAGCUGggGCGa -3'
miRNA:   3'- gaCGG--CCUGCGUgUCUG-----UCGACa-UGC- -5'
5132 5' -55.9 NC_001798.1 + 70560 0.67 0.847533
Target:  5'- -cGCCGGGCuGCGCAccacGGCGGCccuggggccgGUGCGc -3'
miRNA:   3'- gaCGGCCUG-CGUGU----CUGUCGa---------CAUGC- -5'
5132 5' -55.9 NC_001798.1 + 83633 0.68 0.839454
Target:  5'- -gGCCGGAgGCgggaGCGGAgGGgaUGUGCGg -3'
miRNA:   3'- gaCGGCCUgCG----UGUCUgUCg-ACAUGC- -5'
5132 5' -55.9 NC_001798.1 + 125708 0.68 0.831187
Target:  5'- -cGUCGGGCGCGCgcggGGGCGGCgagAUGa -3'
miRNA:   3'- gaCGGCCUGCGUG----UCUGUCGacaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.