miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 59453 0.68 0.652873
Target:  5'- -aACGCaCCCCGCGUGCC-CGggcGCgGUGa -3'
miRNA:   3'- gaUGUG-GGGGCGCGUGGaGC---UGgCAC- -5'
5133 3' -60 NC_001798.1 + 59628 0.69 0.59362
Target:  5'- --cCACCCuCCGC-CGCCUCGGguCCGUa -3'
miRNA:   3'- gauGUGGG-GGCGcGUGGAGCU--GGCAc -5'
5133 3' -60 NC_001798.1 + 61880 0.66 0.749518
Target:  5'- -gGCgGCCCCCucggGCGCGCCcUCGaaGCCGg- -3'
miRNA:   3'- gaUG-UGGGGG----CGCGUGG-AGC--UGGCac -5'
5133 3' -60 NC_001798.1 + 66667 0.68 0.642994
Target:  5'- --cCGCCUCCGCGU-UCUCGGgCGUGa -3'
miRNA:   3'- gauGUGGGGGCGCGuGGAGCUgGCAC- -5'
5133 3' -60 NC_001798.1 + 70349 0.67 0.710589
Target:  5'- -gGCACCCgcuccuggagcaaCUGUGCGCCUUGcACCGg- -3'
miRNA:   3'- gaUGUGGG-------------GGCGCGUGGAGC-UGGCac -5'
5133 3' -60 NC_001798.1 + 71356 0.66 0.737323
Target:  5'- --uCACgCCCGCGCACUgcacccaguacauaUCGGCCcUGg -3'
miRNA:   3'- gauGUGgGGGCGCGUGG--------------AGCUGGcAC- -5'
5133 3' -60 NC_001798.1 + 73323 0.69 0.574008
Target:  5'- -cACGCaggCCCGCGCGCCgUCGACgCGc- -3'
miRNA:   3'- gaUGUGg--GGGCGCGUGG-AGCUG-GCac -5'
5133 3' -60 NC_001798.1 + 77090 0.66 0.749518
Target:  5'- -gACGCCCCCGagaCGCcgguCCUCGugCa-- -3'
miRNA:   3'- gaUGUGGGGGC---GCGu---GGAGCugGcac -5'
5133 3' -60 NC_001798.1 + 77947 0.66 0.75879
Target:  5'- aUGCucCCCCCGCucGCcgccauccaccGCCUCGGCUGg- -3'
miRNA:   3'- gAUGu-GGGGGCG--CG-----------UGGAGCUGGCac -5'
5133 3' -60 NC_001798.1 + 79176 0.67 0.72116
Target:  5'- -cACACCgCCCuGUGCGCC-CGGCUGc- -3'
miRNA:   3'- gaUGUGG-GGG-CGCGUGGaGCUGGCac -5'
5133 3' -60 NC_001798.1 + 79412 0.66 0.783277
Target:  5'- -cGCGCCCCugcucguugaucuuCGCGC-CCUCGACg--- -3'
miRNA:   3'- gaUGUGGGG--------------GCGCGuGGAGCUGgcac -5'
5133 3' -60 NC_001798.1 + 80645 0.71 0.49753
Target:  5'- -cGCACCCCCGcCGCGCgCguuaCGGCCaUGg -3'
miRNA:   3'- gaUGUGGGGGC-GCGUG-Ga---GCUGGcAC- -5'
5133 3' -60 NC_001798.1 + 84215 0.67 0.701883
Target:  5'- -cGCGCCCCCcgGgGCGCCguggGGCCGg- -3'
miRNA:   3'- gaUGUGGGGG--CgCGUGGag--CUGGCac -5'
5133 3' -60 NC_001798.1 + 84532 0.67 0.730695
Target:  5'- --cCAUCCCCGC-CAUCgCGACCGg- -3'
miRNA:   3'- gauGUGGGGGCGcGUGGaGCUGGCac -5'
5133 3' -60 NC_001798.1 + 86576 0.66 0.767957
Target:  5'- --cCACCCCCGCGCcgACCaucgCGACg--- -3'
miRNA:   3'- gauGUGGGGGCGCG--UGGa---GCUGgcac -5'
5133 3' -60 NC_001798.1 + 87071 0.68 0.633106
Target:  5'- -gACgACCCCCGUGUcgcuccccuucaGCCUggaccaGACCGUGg -3'
miRNA:   3'- gaUG-UGGGGGCGCG------------UGGAg-----CUGGCAC- -5'
5133 3' -60 NC_001798.1 + 87166 0.68 0.623219
Target:  5'- gCUGCugCCCCGCGUGCagcgCGGgCGa- -3'
miRNA:   3'- -GAUGugGGGGCGCGUGga--GCUgGCac -5'
5133 3' -60 NC_001798.1 + 91071 0.7 0.506864
Target:  5'- gUACACCUUagggGCGCGCCggaggCGGCCGUc -3'
miRNA:   3'- gAUGUGGGGg---CGCGUGGa----GCUGGCAc -5'
5133 3' -60 NC_001798.1 + 92351 0.67 0.692159
Target:  5'- -cGCGCCCCUcauCGUcgGCCU-GACCGUGg -3'
miRNA:   3'- gaUGUGGGGGc--GCG--UGGAgCUGGCAC- -5'
5133 3' -60 NC_001798.1 + 92587 0.66 0.749518
Target:  5'- aCUACGCgCCCCG-GC-CCUgCGACCu-- -3'
miRNA:   3'- -GAUGUG-GGGGCgCGuGGA-GCUGGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.