miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 30773 0.67 0.711553
Target:  5'- -gGCGgCCgUGCGgGCCggcaCGGCCGUGg -3'
miRNA:   3'- gaUGUgGGgGCGCgUGGa---GCUGGCAC- -5'
5133 3' -60 NC_001798.1 + 31139 0.67 0.72116
Target:  5'- -aGCGCCCCgGCGCGggggCGGCgGUGc -3'
miRNA:   3'- gaUGUGGGGgCGCGUgga-GCUGgCAC- -5'
5133 3' -60 NC_001798.1 + 31582 0.71 0.452103
Target:  5'- -cGCGCCCCCGCGCgGCCgUCGcCCc-- -3'
miRNA:   3'- gaUGUGGGGGCGCG-UGG-AGCuGGcac -5'
5133 3' -60 NC_001798.1 + 32303 0.69 0.564257
Target:  5'- ---gGCCCCCGCGCugCUgCG-CCGc- -3'
miRNA:   3'- gaugUGGGGGCGCGugGA-GCuGGCac -5'
5133 3' -60 NC_001798.1 + 32807 0.66 0.777011
Target:  5'- -gACGCCCCCGCGgGCCaCGGggaGUa -3'
miRNA:   3'- gaUGUGGGGGCGCgUGGaGCUgg-CAc -5'
5133 3' -60 NC_001798.1 + 34991 0.69 0.603469
Target:  5'- -gGgGCCCCUccggccgggGCGCACCUCGGCgGc- -3'
miRNA:   3'- gaUgUGGGGG---------CGCGUGGAGCUGgCac -5'
5133 3' -60 NC_001798.1 + 35577 0.66 0.749518
Target:  5'- ---aGCCCgCgGCGCugCUCGGCUGc- -3'
miRNA:   3'- gaugUGGG-GgCGCGugGAGCUGGCac -5'
5133 3' -60 NC_001798.1 + 36011 0.76 0.246823
Target:  5'- -cACGCCCCCcacCGCGCCUUGGCUGUu -3'
miRNA:   3'- gaUGUGGGGGc--GCGUGGAGCUGGCAc -5'
5133 3' -60 NC_001798.1 + 37054 0.68 0.662737
Target:  5'- -gACACCCCCaCGgacuCGCCUCcACCGUa -3'
miRNA:   3'- gaUGUGGGGGcGC----GUGGAGcUGGCAc -5'
5133 3' -60 NC_001798.1 + 39522 0.77 0.219489
Target:  5'- gCUGCuccCCUCCGCGCcgcGCCUCG-CCGUGg -3'
miRNA:   3'- -GAUGu--GGGGGCGCG---UGGAGCuGGCAC- -5'
5133 3' -60 NC_001798.1 + 44169 0.75 0.283276
Target:  5'- gUACGCCCCCagcacGCGCGCCUCG-UgGUGc -3'
miRNA:   3'- gAUGUGGGGG-----CGCGUGGAGCuGgCAC- -5'
5133 3' -60 NC_001798.1 + 46386 0.66 0.75879
Target:  5'- -aGCGauCCCCCGCGC-CgUCuGGCCGg- -3'
miRNA:   3'- gaUGU--GGGGGCGCGuGgAG-CUGGCac -5'
5133 3' -60 NC_001798.1 + 46839 0.7 0.544893
Target:  5'- aCUcCGCCCCCGCGaauaGCUaCGGCCGc- -3'
miRNA:   3'- -GAuGUGGGGGCGCg---UGGaGCUGGCac -5'
5133 3' -60 NC_001798.1 + 50975 0.66 0.75879
Target:  5'- -cAUGCCCcguCCGCGCAUcgcgccgaCUCGcCCGUGg -3'
miRNA:   3'- gaUGUGGG---GGCGCGUG--------GAGCuGGCAC- -5'
5133 3' -60 NC_001798.1 + 51122 0.7 0.55455
Target:  5'- --cCGCCCCCGCGC-CgUCG-CCGg- -3'
miRNA:   3'- gauGUGGGGGCGCGuGgAGCuGGCac -5'
5133 3' -60 NC_001798.1 + 52650 0.69 0.59362
Target:  5'- gUACACCCCCcUGCGCUacgCGugCGUc -3'
miRNA:   3'- gAUGUGGGGGcGCGUGGa--GCugGCAc -5'
5133 3' -60 NC_001798.1 + 54484 0.66 0.767957
Target:  5'- ---gACCCCCGCgGCcCCUCGGagGUGc -3'
miRNA:   3'- gaugUGGGGGCG-CGuGGAGCUggCAC- -5'
5133 3' -60 NC_001798.1 + 54616 0.67 0.730695
Target:  5'- -gGCGCCCCCGCGCcuCC-CGcCCc-- -3'
miRNA:   3'- gaUGUGGGGGCGCGu-GGaGCuGGcac -5'
5133 3' -60 NC_001798.1 + 56620 0.66 0.749518
Target:  5'- --uCACCCCCucGgGCACacagcCGGCCGUGc -3'
miRNA:   3'- gauGUGGGGG--CgCGUGga---GCUGGCAC- -5'
5133 3' -60 NC_001798.1 + 57589 0.66 0.767957
Target:  5'- -cGCGuuCCCCCGCGgGCCcaccguuaUCGugCGUc -3'
miRNA:   3'- gaUGU--GGGGGCGCgUGG--------AGCugGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.