Results 41 - 60 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5133 | 3' | -60 | NC_001798.1 | + | 153427 | 0.66 | 0.777011 |
Target: 5'- -aGgACCCCCGuCGgGCCaggcgcgCGGCCGUc -3' miRNA: 3'- gaUgUGGGGGC-GCgUGGa------GCUGGCAc -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 79412 | 0.66 | 0.783277 |
Target: 5'- -cGCGCCCCugcucguugaucuuCGCGC-CCUCGACg--- -3' miRNA: 3'- gaUGUGGGG--------------GCGCGuGGAGCUGgcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 29012 | 0.66 | 0.785056 |
Target: 5'- -cGCGCCgCCGCGCgggcccggacuccGCCccggCGACCGc- -3' miRNA: 3'- gaUGUGGgGGCGCG-------------UGGa---GCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 116868 | 0.66 | 0.785944 |
Target: 5'- gCUGCucaugGCCCCC-CaGCACCUgGACCa-- -3' miRNA: 3'- -GAUG-----UGGGGGcG-CGUGGAgCUGGcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 93504 | 0.66 | 0.785944 |
Target: 5'- -gGCGCCCCacgGCGCcCCUCG-UCGg- -3' miRNA: 3'- gaUGUGGGGg--CGCGuGGAGCuGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 107221 | 0.66 | 0.767957 |
Target: 5'- -cAUGCCCCCGacCGCGCC-CGGCaCGa- -3' miRNA: 3'- gaUGUGGGGGC--GCGUGGaGCUG-GCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 86576 | 0.66 | 0.767957 |
Target: 5'- --cCACCCCCGCGCcgACCaucgCGACg--- -3' miRNA: 3'- gauGUGGGGGCGCG--UGGa---GCUGgcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 897 | 0.66 | 0.749518 |
Target: 5'- ---gACCCCCGCcCGCC-CGACCc-- -3' miRNA: 3'- gaugUGGGGGCGcGUGGaGCUGGcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 77090 | 0.66 | 0.749518 |
Target: 5'- -gACGCCCCCGagaCGCcgguCCUCGugCa-- -3' miRNA: 3'- gaUGUGGGGGC---GCGu---GGAGCugGcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 92587 | 0.66 | 0.749518 |
Target: 5'- aCUACGCgCCCCG-GC-CCUgCGACCu-- -3' miRNA: 3'- -GAUGUG-GGGGCgCGuGGA-GCUGGcac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 35577 | 0.66 | 0.749518 |
Target: 5'- ---aGCCCgCgGCGCugCUCGGCUGc- -3' miRNA: 3'- gaugUGGG-GgCGCGugGAGCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 61880 | 0.66 | 0.749518 |
Target: 5'- -gGCgGCCCCCucggGCGCGCCcUCGaaGCCGg- -3' miRNA: 3'- gaUG-UGGGGG----CGCGUGG-AGC--UGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 121276 | 0.66 | 0.749518 |
Target: 5'- --cCGCCCUCGUGCgcgGCCgcccCGACgGUGg -3' miRNA: 3'- gauGUGGGGGCGCG---UGGa---GCUGgCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 135362 | 0.66 | 0.749518 |
Target: 5'- -cGCGCUCCgGCaGCugCUCGGCgGg- -3' miRNA: 3'- gaUGUGGGGgCG-CGugGAGCUGgCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 50975 | 0.66 | 0.75879 |
Target: 5'- -cAUGCCCcguCCGCGCAUcgcgccgaCUCGcCCGUGg -3' miRNA: 3'- gaUGUGGG---GGCGCGUG--------GAGCuGGCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 2618 | 0.66 | 0.75879 |
Target: 5'- -gGCGCCgCCCgGCgGCGCCcUGGCCGg- -3' miRNA: 3'- gaUGUGG-GGG-CG-CGUGGaGCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 46386 | 0.66 | 0.75879 |
Target: 5'- -aGCGauCCCCCGCGC-CgUCuGGCCGg- -3' miRNA: 3'- gaUGU--GGGGGCGCGuGgAG-CUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 77947 | 0.66 | 0.75879 |
Target: 5'- aUGCucCCCCCGCucGCcgccauccaccGCCUCGGCUGg- -3' miRNA: 3'- gAUGu-GGGGGCG--CG-----------UGGAGCUGGCac -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 54484 | 0.66 | 0.767957 |
Target: 5'- ---gACCCCCGCgGCcCCUCGGagGUGc -3' miRNA: 3'- gaugUGGGGGCG-CGuGGAGCUggCAC- -5' |
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5133 | 3' | -60 | NC_001798.1 | + | 57589 | 0.66 | 0.767957 |
Target: 5'- -cGCGuuCCCCCGCGgGCCcaccguuaUCGugCGUc -3' miRNA: 3'- gaUGU--GGGGGCGCgUGG--------AGCugGCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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