miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 150699 0.69 0.564257
Target:  5'- -cGCGCCUgCGCGCGCCccccgcCGGCCGc- -3'
miRNA:   3'- gaUGUGGGgGCGCGUGGa-----GCUGGCac -5'
5133 3' -60 NC_001798.1 + 1957 0.69 0.564257
Target:  5'- -aGCACgCCCUGCGCGCCcagCG-CCGa- -3'
miRNA:   3'- gaUGUG-GGGGCGCGUGGa--GCuGGCac -5'
5133 3' -60 NC_001798.1 + 140174 0.69 0.574008
Target:  5'- -cACACCCCCcaguacGCGgGCCgccugCGGCCGg- -3'
miRNA:   3'- gaUGUGGGGG------CGCgUGGa----GCUGGCac -5'
5133 3' -60 NC_001798.1 + 25982 0.69 0.574008
Target:  5'- cCUGCGCCgCaCCGUGCugGCCUcCGGCCGc- -3'
miRNA:   3'- -GAUGUGG-G-GGCGCG--UGGA-GCUGGCac -5'
5133 3' -60 NC_001798.1 + 73323 0.69 0.574008
Target:  5'- -cACGCaggCCCGCGCGCCgUCGACgCGc- -3'
miRNA:   3'- gaUGUGg--GGGCGCGUGG-AGCUG-GCac -5'
5133 3' -60 NC_001798.1 + 25480 0.69 0.574008
Target:  5'- ---gGCCCgCUGCGCGCCUCGGgcCCGcUGc -3'
miRNA:   3'- gaugUGGG-GGCGCGUGGAGCU--GGC-AC- -5'
5133 3' -60 NC_001798.1 + 138439 0.69 0.583798
Target:  5'- uUGCGCCCCaacaGCACCUUGACgGa- -3'
miRNA:   3'- gAUGUGGGGgcg-CGUGGAGCUGgCac -5'
5133 3' -60 NC_001798.1 + 59628 0.69 0.59362
Target:  5'- --cCACCCuCCGC-CGCCUCGGguCCGUa -3'
miRNA:   3'- gauGUGGG-GGCGcGUGGAGCU--GGCAc -5'
5133 3' -60 NC_001798.1 + 130033 0.69 0.59362
Target:  5'- -gGCuCCCCCGCGgACCUUGGCg--- -3'
miRNA:   3'- gaUGuGGGGGCGCgUGGAGCUGgcac -5'
5133 3' -60 NC_001798.1 + 3135 0.69 0.59362
Target:  5'- --cCGCCUCCGCGCGCC--GGCCGc- -3'
miRNA:   3'- gauGUGGGGGCGCGUGGagCUGGCac -5'
5133 3' -60 NC_001798.1 + 8691 0.69 0.59362
Target:  5'- gUGCGCCgCCGUcgGCGCCUUagGACCGa- -3'
miRNA:   3'- gAUGUGGgGGCG--CGUGGAG--CUGGCac -5'
5133 3' -60 NC_001798.1 + 52650 0.69 0.59362
Target:  5'- gUACACCCCCcUGCGCUacgCGugCGUc -3'
miRNA:   3'- gAUGUGGGGGcGCGUGGa--GCugGCAc -5'
5133 3' -60 NC_001798.1 + 34991 0.69 0.603469
Target:  5'- -gGgGCCCCUccggccgggGCGCACCUCGGCgGc- -3'
miRNA:   3'- gaUgUGGGGG---------CGCGUGGAGCUGgCac -5'
5133 3' -60 NC_001798.1 + 4159 0.69 0.603469
Target:  5'- -gGCACCCCCGC-CuCCUCGucguCCGc- -3'
miRNA:   3'- gaUGUGGGGGCGcGuGGAGCu---GGCac -5'
5133 3' -60 NC_001798.1 + 137248 0.69 0.613337
Target:  5'- uUGCugauccCCUCCGC-CACCUCGACCa-- -3'
miRNA:   3'- gAUGu-----GGGGGCGcGUGGAGCUGGcac -5'
5133 3' -60 NC_001798.1 + 128844 0.69 0.613337
Target:  5'- -gGCGCCCCCGCG-GCCUCcgcguacgagGACC-UGa -3'
miRNA:   3'- gaUGUGGGGGCGCgUGGAG----------CUGGcAC- -5'
5133 3' -60 NC_001798.1 + 122521 0.69 0.613337
Target:  5'- cCUGCGCCaCCCGCGC-CC-CGugCu-- -3'
miRNA:   3'- -GAUGUGG-GGGCGCGuGGaGCugGcac -5'
5133 3' -60 NC_001798.1 + 87166 0.68 0.623219
Target:  5'- gCUGCugCCCCGCGUGCagcgCGGgCGa- -3'
miRNA:   3'- -GAUGugGGGGCGCGUGga--GCUgGCac -5'
5133 3' -60 NC_001798.1 + 145410 0.68 0.623219
Target:  5'- -cGCGCCCCCgcccggccgccGCGCGCCcccgccCGGCCGc- -3'
miRNA:   3'- gaUGUGGGGG-----------CGCGUGGa-----GCUGGCac -5'
5133 3' -60 NC_001798.1 + 145452 0.68 0.623219
Target:  5'- -cGCGCCCCCgcccggccgccGCGCGCCcccgccCGGCCGc- -3'
miRNA:   3'- gaUGUGGGGG-----------CGCGUGGa-----GCUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.