miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 71356 0.66 0.737323
Target:  5'- --uCACgCCCGCGCACUgcacccaguacauaUCGGCCcUGg -3'
miRNA:   3'- gauGUGgGGGCGCGUGG--------------AGCUGGcAC- -5'
5133 3' -60 NC_001798.1 + 30428 0.67 0.730695
Target:  5'- -cACGCCCCCG-GCccgGCCccCGGCCGa- -3'
miRNA:   3'- gaUGUGGGGGCgCG---UGGa-GCUGGCac -5'
5133 3' -60 NC_001798.1 + 54616 0.67 0.730695
Target:  5'- -gGCGCCCCCGCGCcuCC-CGcCCc-- -3'
miRNA:   3'- gaUGUGGGGGCGCGu-GGaGCuGGcac -5'
5133 3' -60 NC_001798.1 + 84532 0.67 0.730695
Target:  5'- --cCAUCCCCGC-CAUCgCGACCGg- -3'
miRNA:   3'- gauGUGGGGGCGcGUGGaGCUGGCac -5'
5133 3' -60 NC_001798.1 + 96930 0.67 0.730695
Target:  5'- -gACGCCgCCCGCGCGCgagCGcuCUGUGu -3'
miRNA:   3'- gaUGUGG-GGGCGCGUGga-GCu-GGCAC- -5'
5133 3' -60 NC_001798.1 + 138599 0.67 0.730695
Target:  5'- -gGCACUCgCCGCGCugCccgcUGACCGg- -3'
miRNA:   3'- gaUGUGGG-GGCGCGugGa---GCUGGCac -5'
5133 3' -60 NC_001798.1 + 123756 0.67 0.728794
Target:  5'- -cGCACCCCCggaccccgcugcuGUGCACCcuagccuUCGGCCa-- -3'
miRNA:   3'- gaUGUGGGGG-------------CGCGUGG-------AGCUGGcac -5'
5133 3' -60 NC_001798.1 + 79176 0.67 0.72116
Target:  5'- -cACACCgCCCuGUGCGCC-CGGCUGc- -3'
miRNA:   3'- gaUGUGG-GGG-CGCGUGGaGCUGGCac -5'
5133 3' -60 NC_001798.1 + 104315 0.67 0.72116
Target:  5'- -gACGCCCCCcgaGCGaugGCCUCcGCCGg- -3'
miRNA:   3'- gaUGUGGGGG---CGCg--UGGAGcUGGCac -5'
5133 3' -60 NC_001798.1 + 137383 0.67 0.72116
Target:  5'- -cGCACCCCUcgGCGUucucCCgggCGACCGg- -3'
miRNA:   3'- gaUGUGGGGG--CGCGu---GGa--GCUGGCac -5'
5133 3' -60 NC_001798.1 + 98 0.67 0.72116
Target:  5'- -gGCAgCCCCGCGCGCCcccuUCc-CCGUc -3'
miRNA:   3'- gaUGUgGGGGCGCGUGG----AGcuGGCAc -5'
5133 3' -60 NC_001798.1 + 24984 0.67 0.72116
Target:  5'- cCUGCGCCCCCugcuggcCGaCACCgucgccgCGGCCGa- -3'
miRNA:   3'- -GAUGUGGGGGc------GC-GUGGa------GCUGGCac -5'
5133 3' -60 NC_001798.1 + 26280 0.67 0.72116
Target:  5'- -cGCGCCUgCGCGCGCUggGGCC-UGg -3'
miRNA:   3'- gaUGUGGGgGCGCGUGGagCUGGcAC- -5'
5133 3' -60 NC_001798.1 + 31139 0.67 0.72116
Target:  5'- -aGCGCCCCgGCGCGggggCGGCgGUGc -3'
miRNA:   3'- gaUGUGGGGgCGCGUgga-GCUGgCAC- -5'
5133 3' -60 NC_001798.1 + 154436 0.67 0.72116
Target:  5'- -gGCAgCCCCGCGCGCCcccuUCc-CCGUc -3'
miRNA:   3'- gaUGUgGGGGCGCGUGG----AGcuGGCAc -5'
5133 3' -60 NC_001798.1 + 2106 0.67 0.72116
Target:  5'- --cCGCCCCCgGCGCGgCCcgCGGCCa-- -3'
miRNA:   3'- gauGUGGGGG-CGCGU-GGa-GCUGGcac -5'
5133 3' -60 NC_001798.1 + 98760 0.67 0.711553
Target:  5'- --cCGCCCCC-CGaCGCCaacgCGACCGUc -3'
miRNA:   3'- gauGUGGGGGcGC-GUGGa---GCUGGCAc -5'
5133 3' -60 NC_001798.1 + 30773 0.67 0.711553
Target:  5'- -gGCGgCCgUGCGgGCCggcaCGGCCGUGg -3'
miRNA:   3'- gaUGUgGGgGCGCgUGGa---GCUGGCAC- -5'
5133 3' -60 NC_001798.1 + 134459 0.67 0.711553
Target:  5'- -aGCACCCCgGCGCGCggUUGG-CGUGg -3'
miRNA:   3'- gaUGUGGGGgCGCGUGg-AGCUgGCAC- -5'
5133 3' -60 NC_001798.1 + 70349 0.67 0.710589
Target:  5'- -gGCACCCgcuccuggagcaaCUGUGCGCCUUGcACCGg- -3'
miRNA:   3'- gaUGUGGG-------------GGCGCGUGGAGC-UGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.