miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 5370 0.67 0.701883
Target:  5'- -gACGCCCgCGCGU-CCgCGuCCGUGg -3'
miRNA:   3'- gaUGUGGGgGCGCGuGGaGCuGGCAC- -5'
5133 3' -60 NC_001798.1 + 84215 0.67 0.701883
Target:  5'- -cGCGCCCCCcgGgGCGCCguggGGCCGg- -3'
miRNA:   3'- gaUGUGGGGG--CgCGUGGag--CUGGCac -5'
5133 3' -60 NC_001798.1 + 105966 0.67 0.701883
Target:  5'- -cACACCCCCacccuccgcaGCGaCGCCUaCGACCc-- -3'
miRNA:   3'- gaUGUGGGGG----------CGC-GUGGA-GCUGGcac -5'
5133 3' -60 NC_001798.1 + 113504 0.67 0.701883
Target:  5'- -cGCGgCCCUGUGCGCCcugguggCGGCCGc- -3'
miRNA:   3'- gaUGUgGGGGCGCGUGGa------GCUGGCac -5'
5133 3' -60 NC_001798.1 + 124288 0.67 0.701883
Target:  5'- --cCGCCgCCCGCGCAUCaCGGCCc-- -3'
miRNA:   3'- gauGUGG-GGGCGCGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 26426 0.67 0.700913
Target:  5'- -cGCGCCCCCGCuggugcuGCGCgaCGACgCGg- -3'
miRNA:   3'- gaUGUGGGGGCG-------CGUGgaGCUG-GCac -5'
5133 3' -60 NC_001798.1 + 141302 0.67 0.692159
Target:  5'- aCUACGCCCUCGaagaGCcugagaccACCgCGGCCGUc -3'
miRNA:   3'- -GAUGUGGGGGCg---CG--------UGGaGCUGGCAc -5'
5133 3' -60 NC_001798.1 + 92351 0.67 0.692159
Target:  5'- -cGCGCCCCUcauCGUcgGCCU-GACCGUGg -3'
miRNA:   3'- gaUGUGGGGGc--GCG--UGGAgCUGGCAC- -5'
5133 3' -60 NC_001798.1 + 108554 0.67 0.692159
Target:  5'- -gGCGCCUCCGCGCugUUgCGGucCCGg- -3'
miRNA:   3'- gaUGUGGGGGCGCGugGA-GCU--GGCac -5'
5133 3' -60 NC_001798.1 + 146893 0.67 0.692159
Target:  5'- -gGCugCUCCGCGCACCggcgCGcCCu-- -3'
miRNA:   3'- gaUGugGGGGCGCGUGGa---GCuGGcac -5'
5133 3' -60 NC_001798.1 + 153972 0.67 0.682387
Target:  5'- -gACGCggCCgGCGCGCuCUCGACCGc- -3'
miRNA:   3'- gaUGUGg-GGgCGCGUG-GAGCUGGCac -5'
5133 3' -60 NC_001798.1 + 24754 0.67 0.682387
Target:  5'- -cGCGCCCCgccUGCGCGCCU-GGCUGc- -3'
miRNA:   3'- gaUGUGGGG---GCGCGUGGAgCUGGCac -5'
5133 3' -60 NC_001798.1 + 37054 0.68 0.662737
Target:  5'- -gACACCCCCaCGgacuCGCCUCcACCGUa -3'
miRNA:   3'- gaUGUGGGGGcGC----GUGGAGcUGGCAc -5'
5133 3' -60 NC_001798.1 + 199 0.68 0.652873
Target:  5'- -gGCGCCCCCGCGCGgCUuuuuucccgCGcCCGc- -3'
miRNA:   3'- gaUGUGGGGGCGCGUgGA---------GCuGGCac -5'
5133 3' -60 NC_001798.1 + 59453 0.68 0.652873
Target:  5'- -aACGCaCCCCGCGUGCC-CGggcGCgGUGa -3'
miRNA:   3'- gaUGUG-GGGGCGCGUGGaGC---UGgCAC- -5'
5133 3' -60 NC_001798.1 + 27955 0.68 0.652873
Target:  5'- -cGCGCCCCgGCGCuCCa--GCCGUGc -3'
miRNA:   3'- gaUGUGGGGgCGCGuGGagcUGGCAC- -5'
5133 3' -60 NC_001798.1 + 154537 0.68 0.652873
Target:  5'- -gGCGCCCCCGCGCGgCUuuuuucccgCGcCCGc- -3'
miRNA:   3'- gaUGUGGGGGCGCGUgGA---------GCuGGCac -5'
5133 3' -60 NC_001798.1 + 27979 0.68 0.652873
Target:  5'- -cGCGCCCCgGCGCuCCa--GCCGUGc -3'
miRNA:   3'- gaUGUGGGGgCGCGuGGagcUGGCAC- -5'
5133 3' -60 NC_001798.1 + 24507 0.68 0.642994
Target:  5'- --cCGCCUCCGCGCcgGCCggGGCCGa- -3'
miRNA:   3'- gauGUGGGGGCGCG--UGGagCUGGCac -5'
5133 3' -60 NC_001798.1 + 66667 0.68 0.642994
Target:  5'- --cCGCCUCCGCGU-UCUCGGgCGUGa -3'
miRNA:   3'- gauGUGGGGGCGCGuGGAGCUgGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.