miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 46386 0.66 0.75879
Target:  5'- -aGCGauCCCCCGCGC-CgUCuGGCCGg- -3'
miRNA:   3'- gaUGU--GGGGGCGCGuGgAG-CUGGCac -5'
5133 3' -60 NC_001798.1 + 77947 0.66 0.75879
Target:  5'- aUGCucCCCCCGCucGCcgccauccaccGCCUCGGCUGg- -3'
miRNA:   3'- gAUGu-GGGGGCG--CG-----------UGGAGCUGGCac -5'
5133 3' -60 NC_001798.1 + 807 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 777 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 747 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 717 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 687 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 129433 0.66 0.749518
Target:  5'- --uCACCCCCGUcCGCgUCGAgCCGg- -3'
miRNA:   3'- gauGUGGGGGCGcGUGgAGCU-GGCac -5'
5133 3' -60 NC_001798.1 + 56620 0.66 0.749518
Target:  5'- --uCACCCCCucGgGCACacagcCGGCCGUGc -3'
miRNA:   3'- gauGUGGGGG--CgCGUGga---GCUGGCAC- -5'
5133 3' -60 NC_001798.1 + 837 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 867 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 135362 0.66 0.749518
Target:  5'- -cGCGCUCCgGCaGCugCUCGGCgGg- -3'
miRNA:   3'- gaUGUGGGGgCG-CGugGAGCUGgCac -5'
5133 3' -60 NC_001798.1 + 121276 0.66 0.749518
Target:  5'- --cCGCCCUCGUGCgcgGCCgcccCGACgGUGg -3'
miRNA:   3'- gauGUGGGGGCGCG---UGGa---GCUGgCAC- -5'
5133 3' -60 NC_001798.1 + 61880 0.66 0.749518
Target:  5'- -gGCgGCCCCCucggGCGCGCCcUCGaaGCCGg- -3'
miRNA:   3'- gaUG-UGGGGG----CGCGUGG-AGC--UGGCac -5'
5133 3' -60 NC_001798.1 + 35577 0.66 0.749518
Target:  5'- ---aGCCCgCgGCGCugCUCGGCUGc- -3'
miRNA:   3'- gaugUGGG-GgCGCGugGAGCUGGCac -5'
5133 3' -60 NC_001798.1 + 92587 0.66 0.749518
Target:  5'- aCUACGCgCCCCG-GC-CCUgCGACCu-- -3'
miRNA:   3'- -GAUGUG-GGGGCgCGuGGA-GCUGGcac -5'
5133 3' -60 NC_001798.1 + 77090 0.66 0.749518
Target:  5'- -gACGCCCCCGagaCGCcgguCCUCGugCa-- -3'
miRNA:   3'- gaUGUGGGGGC---GCGu---GGAGCugGcac -5'
5133 3' -60 NC_001798.1 + 897 0.66 0.749518
Target:  5'- ---gACCCCCGCcCGCC-CGACCc-- -3'
miRNA:   3'- gaugUGGGGGCGcGUGGaGCUGGcac -5'
5133 3' -60 NC_001798.1 + 124191 0.66 0.740151
Target:  5'- aUAUGgCCCaGCGCACCcUGGCCGUc -3'
miRNA:   3'- gAUGUgGGGgCGCGUGGaGCUGGCAc -5'
5133 3' -60 NC_001798.1 + 108266 0.66 0.740151
Target:  5'- -aACACCCCCGa-CGCCagCGACCc-- -3'
miRNA:   3'- gaUGUGGGGGCgcGUGGa-GCUGGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.