miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 18596 0.66 0.777011
Target:  5'- -aGCAgCCCCCccggguccGCGCGCCguccCG-CCGUGc -3'
miRNA:   3'- gaUGU-GGGGG--------CGCGUGGa---GCuGGCAC- -5'
5133 3' -60 NC_001798.1 + 23349 0.71 0.49753
Target:  5'- -cGCGCCCCC-CGCcgGCgCUCGGCCGc- -3'
miRNA:   3'- gaUGUGGGGGcGCG--UG-GAGCUGGCac -5'
5133 3' -60 NC_001798.1 + 23493 0.73 0.360874
Target:  5'- -cGCGCCCCCGCcaGCGCCgcaGACCa-- -3'
miRNA:   3'- gaUGUGGGGGCG--CGUGGag-CUGGcac -5'
5133 3' -60 NC_001798.1 + 23659 0.66 0.777011
Target:  5'- -aGCGCCgCCGgGC-CCgcgCGGCgGUGg -3'
miRNA:   3'- gaUGUGGgGGCgCGuGGa--GCUGgCAC- -5'
5133 3' -60 NC_001798.1 + 24507 0.68 0.642994
Target:  5'- --cCGCCUCCGCGCcgGCCggGGCCGa- -3'
miRNA:   3'- gauGUGGGGGCGCG--UGGagCUGGCac -5'
5133 3' -60 NC_001798.1 + 24703 0.73 0.35628
Target:  5'- -cGCGCCCCCGCGC-CCggggcccgcgggcgCGGCCGc- -3'
miRNA:   3'- gaUGUGGGGGCGCGuGGa-------------GCUGGCac -5'
5133 3' -60 NC_001798.1 + 24754 0.67 0.682387
Target:  5'- -cGCGCCCCgccUGCGCGCCU-GGCUGc- -3'
miRNA:   3'- gaUGUGGGG---GCGCGUGGAgCUGGCac -5'
5133 3' -60 NC_001798.1 + 24984 0.67 0.72116
Target:  5'- cCUGCGCCCCCugcuggcCGaCACCgucgccgCGGCCGa- -3'
miRNA:   3'- -GAUGUGGGGGc------GC-GUGGa------GCUGGCac -5'
5133 3' -60 NC_001798.1 + 25135 0.68 0.633106
Target:  5'- -gACGCCCCC-CGCcCCgCGGCCGc- -3'
miRNA:   3'- gaUGUGGGGGcGCGuGGaGCUGGCac -5'
5133 3' -60 NC_001798.1 + 25294 0.72 0.425959
Target:  5'- -cACACgCCgGCGC-CCUCGGCCGc- -3'
miRNA:   3'- gaUGUGgGGgCGCGuGGAGCUGGCac -5'
5133 3' -60 NC_001798.1 + 25331 0.71 0.488274
Target:  5'- aCUGCG-CCCCGCGgGCCgUGGCCGa- -3'
miRNA:   3'- -GAUGUgGGGGCGCgUGGaGCUGGCac -5'
5133 3' -60 NC_001798.1 + 25480 0.69 0.574008
Target:  5'- ---gGCCCgCUGCGCGCCUCGGgcCCGcUGc -3'
miRNA:   3'- gaugUGGG-GGCGCGUGGAGCU--GGC-AC- -5'
5133 3' -60 NC_001798.1 + 25982 0.69 0.574008
Target:  5'- cCUGCGCCgCaCCGUGCugGCCUcCGGCCGc- -3'
miRNA:   3'- -GAUGUGG-G-GGCGCG--UGGA-GCUGGCac -5'
5133 3' -60 NC_001798.1 + 26072 0.71 0.470011
Target:  5'- -cGCGCCgCCGCuGCGCCUCuGCCGc- -3'
miRNA:   3'- gaUGUGGgGGCG-CGUGGAGcUGGCac -5'
5133 3' -60 NC_001798.1 + 26280 0.67 0.72116
Target:  5'- -cGCGCCUgCGCGCGCUggGGCC-UGg -3'
miRNA:   3'- gaUGUGGGgGCGCGUGGagCUGGcAC- -5'
5133 3' -60 NC_001798.1 + 26426 0.67 0.700913
Target:  5'- -cGCGCCCCCGCuggugcuGCGCgaCGACgCGg- -3'
miRNA:   3'- gaUGUGGGGGCG-------CGUGgaGCUG-GCac -5'
5133 3' -60 NC_001798.1 + 27955 0.68 0.652873
Target:  5'- -cGCGCCCCgGCGCuCCa--GCCGUGc -3'
miRNA:   3'- gaUGUGGGGgCGCGuGGagcUGGCAC- -5'
5133 3' -60 NC_001798.1 + 27979 0.68 0.652873
Target:  5'- -cGCGCCCCgGCGCuCCa--GCCGUGc -3'
miRNA:   3'- gaUGUGGGGgCGCGuGGagcUGGCAC- -5'
5133 3' -60 NC_001798.1 + 29012 0.66 0.785056
Target:  5'- -cGCGCCgCCGCGCgggcccggacuccGCCccggCGACCGc- -3'
miRNA:   3'- gaUGUGGgGGCGCG-------------UGGa---GCUGGCac -5'
5133 3' -60 NC_001798.1 + 30428 0.67 0.730695
Target:  5'- -cACGCCCCCG-GCccgGCCccCGGCCGa- -3'
miRNA:   3'- gaUGUGGGGGCgCG---UGGa-GCUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.