miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 26072 0.71 0.470011
Target:  5'- -cGCGCCgCCGCuGCGCCUCuGCCGc- -3'
miRNA:   3'- gaUGUGGgGGCG-CGUGGAGcUGGCac -5'
5133 3' -60 NC_001798.1 + 109018 0.71 0.4791
Target:  5'- -aACGCCCCCGCgGUgcuccccggGCCUCcGGCCGg- -3'
miRNA:   3'- gaUGUGGGGGCG-CG---------UGGAG-CUGGCac -5'
5133 3' -60 NC_001798.1 + 147048 0.71 0.487353
Target:  5'- gUGCGCCCCgGCcggaggggcccccGCACCUCGGCgGc- -3'
miRNA:   3'- gAUGUGGGGgCG-------------CGUGGAGCUGgCac -5'
5133 3' -60 NC_001798.1 + 146632 0.71 0.488274
Target:  5'- uUAgGCCCCCGCGgGCauccggCGGCCGg- -3'
miRNA:   3'- gAUgUGGGGGCGCgUGga----GCUGGCac -5'
5133 3' -60 NC_001798.1 + 25331 0.71 0.488274
Target:  5'- aCUGCG-CCCCGCGgGCCgUGGCCGa- -3'
miRNA:   3'- -GAUGUgGGGGCGCgUGGaGCUGGCac -5'
5133 3' -60 NC_001798.1 + 23349 0.71 0.49753
Target:  5'- -cGCGCCCCC-CGCcgGCgCUCGGCCGc- -3'
miRNA:   3'- gaUGUGGGGGcGCG--UG-GAGCUGGCac -5'
5133 3' -60 NC_001798.1 + 80645 0.71 0.49753
Target:  5'- -cGCACCCCCGcCGCGCgCguuaCGGCCaUGg -3'
miRNA:   3'- gaUGUGGGGGC-GCGUG-Ga---GCUGGcAC- -5'
5133 3' -60 NC_001798.1 + 1207 0.71 0.49753
Target:  5'- -aGCACCgucCCCGCGCgGCCcgCGGCCGa- -3'
miRNA:   3'- gaUGUGG---GGGCGCG-UGGa-GCUGGCac -5'
5133 3' -60 NC_001798.1 + 91071 0.7 0.506864
Target:  5'- gUACACCUUagggGCGCGCCggaggCGGCCGUc -3'
miRNA:   3'- gAUGUGGGGg---CGCGUGGa----GCUGGCAc -5'
5133 3' -60 NC_001798.1 + 138737 0.7 0.506864
Target:  5'- -gGCGCgCUCCGCgGCcCCggCGACCGUGg -3'
miRNA:   3'- gaUGUG-GGGGCG-CGuGGa-GCUGGCAC- -5'
5133 3' -60 NC_001798.1 + 100169 0.7 0.525749
Target:  5'- --uCGCCUCCGC-CACCgUCGGCCGg- -3'
miRNA:   3'- gauGUGGGGGCGcGUGG-AGCUGGCac -5'
5133 3' -60 NC_001798.1 + 46839 0.7 0.544893
Target:  5'- aCUcCGCCCCCGCGaauaGCUaCGGCCGc- -3'
miRNA:   3'- -GAuGUGGGGGCGCg---UGGaGCUGGCac -5'
5133 3' -60 NC_001798.1 + 123438 0.7 0.544893
Target:  5'- -gGCGCCCCCcccgacgcGCGCGCCccCGACCc-- -3'
miRNA:   3'- gaUGUGGGGG--------CGCGUGGa-GCUGGcac -5'
5133 3' -60 NC_001798.1 + 110262 0.7 0.544893
Target:  5'- -cGCACCgaaaaCCgGCGCgACCUCGGCCucGUGg -3'
miRNA:   3'- gaUGUGG-----GGgCGCG-UGGAGCUGG--CAC- -5'
5133 3' -60 NC_001798.1 + 118521 0.7 0.55455
Target:  5'- -cGCACCCCCGCGUuCCggugucucgCGGCCc-- -3'
miRNA:   3'- gaUGUGGGGGCGCGuGGa--------GCUGGcac -5'
5133 3' -60 NC_001798.1 + 51122 0.7 0.55455
Target:  5'- --cCGCCCCCGCGC-CgUCG-CCGg- -3'
miRNA:   3'- gauGUGGGGGCGCGuGgAGCuGGCac -5'
5133 3' -60 NC_001798.1 + 124424 0.7 0.55455
Target:  5'- -aGCugCCCCGCGguCgCgcgGGCCGUGg -3'
miRNA:   3'- gaUGugGGGGCGCguG-Gag-CUGGCAC- -5'
5133 3' -60 NC_001798.1 + 122872 0.69 0.564257
Target:  5'- -gACAUCCCCGCcCGCUUCG-CCGa- -3'
miRNA:   3'- gaUGUGGGGGCGcGUGGAGCuGGCac -5'
5133 3' -60 NC_001798.1 + 32303 0.69 0.564257
Target:  5'- ---gGCCCCCGCGCugCUgCG-CCGc- -3'
miRNA:   3'- gaugUGGGGGCGCGugGA-GCuGGCac -5'
5133 3' -60 NC_001798.1 + 150699 0.69 0.564257
Target:  5'- -cGCGCCUgCGCGCGCCccccgcCGGCCGc- -3'
miRNA:   3'- gaUGUGGGgGCGCGUGGa-----GCUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.