miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 5' -55.4 NC_001798.1 + 28772 0.66 0.901475
Target:  5'- cCGCGgaggAGGAGGagGCGGcGGCGg--- -3'
miRNA:   3'- -GCGUa---UUCUCCagCGCCcCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 29900 0.68 0.817426
Target:  5'- uGCGgguuggGGGuGGUCGCGGGcGGUGg--- -3'
miRNA:   3'- gCGUa-----UUCuCCAGCGCCC-CCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 30936 0.71 0.692618
Target:  5'- gGCGgcGGGGGUCGggcgGGGGGCGg--- -3'
miRNA:   3'- gCGUauUCUCCAGCg---CCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 31147 0.66 0.894933
Target:  5'- gGCGcGGGGGcGgcggUGCGGGGGCGa--- -3'
miRNA:   3'- gCGUaUUCUC-Ca---GCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 32906 0.68 0.834542
Target:  5'- gGCAggGGGAGGUgGgGGGGGgGa--- -3'
miRNA:   3'- gCGUa-UUCUCCAgCgCCCCCgCauuu -5'
5133 5' -55.4 NC_001798.1 + 34962 0.67 0.87828
Target:  5'- gCGCcgGAGGGGgcggccgccgaggUGCGGGGGCc---- -3'
miRNA:   3'- -GCGuaUUCUCCa------------GCGCCCCCGcauuu -5'
5133 5' -55.4 NC_001798.1 + 36698 0.68 0.834542
Target:  5'- gCGCAggggagGGGAGGaCGCGGGGGa----- -3'
miRNA:   3'- -GCGUa-----UUCUCCaGCGCCCCCgcauuu -5'
5133 5' -55.4 NC_001798.1 + 39809 0.7 0.712906
Target:  5'- aCGCc--GGuGGUCGCGGGuGGCGg--- -3'
miRNA:   3'- -GCGuauUCuCCAGCGCCC-CCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 41443 0.73 0.54869
Target:  5'- gGCGUGGGGGGUCcaugccccgccgGgGGGGGCGg--- -3'
miRNA:   3'- gCGUAUUCUCCAG------------CgCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 43247 0.74 0.518671
Target:  5'- uGCAUGAGAGccgcgaUCGcCGGGGGCGUc-- -3'
miRNA:   3'- gCGUAUUCUCc-----AGC-GCCCCCGCAuuu -5'
5133 5' -55.4 NC_001798.1 + 43973 0.69 0.799622
Target:  5'- gGCGU---GGGUCGUGGGGgauuGCGUAGGu -3'
miRNA:   3'- gCGUAuucUCCAGCGCCCC----CGCAUUU- -5'
5133 5' -55.4 NC_001798.1 + 46521 0.69 0.781199
Target:  5'- gGCucgGUGAG-GGUCGgGGGGGUGg--- -3'
miRNA:   3'- gCG---UAUUCuCCAGCgCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 46665 0.71 0.683416
Target:  5'- aGCAUcacguGGGGcccggggccggauacCGCGGGGGCGUGAAu -3'
miRNA:   3'- gCGUAuu---CUCCa--------------GCGCCCCCGCAUUU- -5'
5133 5' -55.4 NC_001798.1 + 52235 0.71 0.682392
Target:  5'- gGCucucGGuGGUCGUGGGGGCGc--- -3'
miRNA:   3'- gCGuau-UCuCCAGCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 55980 0.83 0.163979
Target:  5'- gCGCcgGGGAGGcCGCGGGGGCGa--- -3'
miRNA:   3'- -GCGuaUUCUCCaGCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 56170 0.66 0.913843
Target:  5'- aCGCcc-GGGGGaCgGCGGGGGgGUGGGg -3'
miRNA:   3'- -GCGuauUCUCCaG-CGCCCCCgCAUUU- -5'
5133 5' -55.4 NC_001798.1 + 57507 0.74 0.528609
Target:  5'- uCGCcuUGcGGGGUUGgGGGGGCGUGGGu -3'
miRNA:   3'- -GCGu-AUuCUCCAGCgCCCCCGCAUUU- -5'
5133 5' -55.4 NC_001798.1 + 59656 0.7 0.726945
Target:  5'- uCGCGgagAGGGGGggcgacucggcucgCGUGGGGGCGgcGGg -3'
miRNA:   3'- -GCGUa--UUCUCCa-------------GCGCCCCCGCauUU- -5'
5133 5' -55.4 NC_001798.1 + 81985 0.68 0.850905
Target:  5'- cCGCcgAAGGagcGGUCGUccccGGGGGCGa--- -3'
miRNA:   3'- -GCGuaUUCU---CCAGCG----CCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 85271 0.67 0.866457
Target:  5'- cCGCGcgcGAGGcuUCGgGGGGGCGg--- -3'
miRNA:   3'- -GCGUauuCUCC--AGCgCCCCCGCauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.