Results 21 - 40 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 91292 | 0.7 | 0.288543 |
Target: 5'- gGGUGGCucCCCGGGGguugugGGGGGCaaaaaacccagacgCCGCCc -3' miRNA: 3'- -CUACCG--GGGCUCCa-----CCCCCG--------------GGUGGu -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 121293 | 0.69 | 0.337976 |
Target: 5'- ---cGCCCCGAcGGUGGGGcGgCCGCgAa -3' miRNA: 3'- cuacCGGGGCU-CCACCCC-CgGGUGgU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 65846 | 0.69 | 0.333689 |
Target: 5'- uGAUGGCCCgGAggguggccugguaguGGUggccuGGGGGUUUACCAg -3' miRNA: 3'- -CUACCGGGgCU---------------CCA-----CCCCCGGGUGGU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 29486 | 0.69 | 0.330854 |
Target: 5'- -uUGGuCCCCGGGGacGGGGCCgCcCCGa -3' miRNA: 3'- cuACC-GGGGCUCCacCCCCGG-GuGGU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 123418 | 0.69 | 0.330854 |
Target: 5'- --cGGCCCCGccGGGUcaccGGGGcGCCCcCCc -3' miRNA: 3'- cuaCCGGGGC--UCCA----CCCC-CGGGuGGu -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 18019 | 0.69 | 0.330854 |
Target: 5'- -cUGGCUCCGGGcaGGGGGgCgGCCGa -3' miRNA: 3'- cuACCGGGGCUCcaCCCCCgGgUGGU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 52974 | 0.69 | 0.316943 |
Target: 5'- --aGGCgcgcgaCCGGGcUGGGcGGCCCGCCAc -3' miRNA: 3'- cuaCCGg-----GGCUCcACCC-CCGGGUGGU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 76037 | 0.69 | 0.317628 |
Target: 5'- --gGGCCCCGAGGccauccaggcgcggcUGGaGgacgugcggauccaGGCCCGCCGg -3' miRNA: 3'- cuaCCGGGGCUCC---------------ACC-C--------------CCGGGUGGU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 54492 | 0.69 | 0.316943 |
Target: 5'- --cGGCCCCucgGAGGUGcaGGCgCCACCGc -3' miRNA: 3'- cuaCCGGGG---CUCCACccCCG-GGUGGU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 130130 | 0.69 | 0.330854 |
Target: 5'- --cGGCCUCGuGGUcGGGGG-CCACUu -3' miRNA: 3'- cuaCCGGGGCuCCA-CCCCCgGGUGGu -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 106804 | 0.68 | 0.345208 |
Target: 5'- --cGGaCCCCacGGGGUGGGGaagaCCACCAc -3' miRNA: 3'- cuaCC-GGGG--CUCCACCCCcg--GGUGGU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 36267 | 0.68 | 0.352552 |
Target: 5'- uGUGGaCCCCGGGGUGGGcGGCggggggggguGCCGu -3' miRNA: 3'- cUACC-GGGGCUCCACCC-CCGgg--------UGGU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 108478 | 0.68 | 0.360005 |
Target: 5'- cGAgcuCCCCGAGGc-GGGGCCCACg- -3' miRNA: 3'- -CUaccGGGGCUCCacCCCCGGGUGgu -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 2083 | 0.68 | 0.366806 |
Target: 5'- --cGGCggaccacUCCG-GG-GGGGGCCCGCCc -3' miRNA: 3'- cuaCCG-------GGGCuCCaCCCCCGGGUGGu -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 25670 | 0.68 | 0.367567 |
Target: 5'- --cGGCCCUG-GGcaaccggcucUGcGGGCCCGCCAc -3' miRNA: 3'- cuaCCGGGGCuCC----------ACcCCCGGGUGGU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 2569 | 0.68 | 0.367567 |
Target: 5'- --cGGCCgCGGGGcgGGGGGCguCCGCgCGg -3' miRNA: 3'- cuaCCGGgGCUCCa-CCCCCG--GGUG-GU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 75301 | 0.68 | 0.370622 |
Target: 5'- -cUGGCCCgCGAGGUGGccgcguguucgcaGCUCACCAu -3' miRNA: 3'- cuACCGGG-GCUCCACCcc-----------CGGGUGGU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 23572 | 0.68 | 0.375238 |
Target: 5'- --gGGCCCCGGGG-GcGGcGCCCcgGCCGa -3' miRNA: 3'- cuaCCGGGGCUCCaCcCC-CGGG--UGGU- -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 52232 | 0.68 | 0.383016 |
Target: 5'- aGUGGCuCUCGGuGGUcguGGGGGCgCGCCu -3' miRNA: 3'- cUACCG-GGGCU-CCA---CCCCCGgGUGGu -5' |
|||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 152239 | 0.68 | 0.383016 |
Target: 5'- --cGGCCgCuCGGGGccGGGGUCCGCCc -3' miRNA: 3'- cuaCCGG-G-GCUCCacCCCCGGGUGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home