miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 3' -65.5 NC_001798.1 + 34975 0.78 0.073829
Target:  5'- --cGGCCgCCGAGGUgcGGGGGCCCcuccgGCCGg -3'
miRNA:   3'- cuaCCGG-GGCUCCA--CCCCCGGG-----UGGU- -5'
5134 3' -65.5 NC_001798.1 + 36267 0.68 0.352552
Target:  5'- uGUGGaCCCCGGGGUGGGcGGCggggggggguGCCGu -3'
miRNA:   3'- cUACC-GGGGCUCCACCC-CCGgg--------UGGU- -5'
5134 3' -65.5 NC_001798.1 + 44492 0.66 0.475244
Target:  5'- gGGUGcGCCCUuucGGGUGGuGGGUCaCGCCc -3'
miRNA:   3'- -CUAC-CGGGGc--UCCACC-CCCGG-GUGGu -5'
5134 3' -65.5 NC_001798.1 + 52232 0.68 0.383016
Target:  5'- aGUGGCuCUCGGuGGUcguGGGGGCgCGCCu -3'
miRNA:   3'- cUACCG-GGGCU-CCA---CCCCCGgGUGGu -5'
5134 3' -65.5 NC_001798.1 + 52631 0.66 0.48418
Target:  5'- --cGGcCCCCGAGGUGGGcacGUaCACCc -3'
miRNA:   3'- cuaCC-GGGGCUCCACCCc--CGgGUGGu -5'
5134 3' -65.5 NC_001798.1 + 52974 0.69 0.316943
Target:  5'- --aGGCgcgcgaCCGGGcUGGGcGGCCCGCCAc -3'
miRNA:   3'- cuaCCGg-----GGCUCcACCC-CCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 54492 0.69 0.316943
Target:  5'- --cGGCCCCucgGAGGUGcaGGCgCCACCGc -3'
miRNA:   3'- cuaCCGGGG---CUCCACccCCG-GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 57433 0.71 0.248336
Target:  5'- --gGGCUCCGAGGaugucuucGGGGGCCCGg-- -3'
miRNA:   3'- cuaCCGGGGCUCCa-------CCCCCGGGUggu -5'
5134 3' -65.5 NC_001798.1 + 59147 0.67 0.41518
Target:  5'- cGAUGGCaCCCacgcaggcGAGGcGGGGGCgC-CCGu -3'
miRNA:   3'- -CUACCG-GGG--------CUCCaCCCCCGgGuGGU- -5'
5134 3' -65.5 NC_001798.1 + 59807 0.66 0.475244
Target:  5'- -cUGGCCCuCGAGGccuucuucuucUGGGGcgccgcggucGCCCGCg- -3'
miRNA:   3'- cuACCGGG-GCUCC-----------ACCCC----------CGGGUGgu -5'
5134 3' -65.5 NC_001798.1 + 65846 0.69 0.333689
Target:  5'- uGAUGGCCCgGAggguggccugguaguGGUggccuGGGGGUUUACCAg -3'
miRNA:   3'- -CUACCGGGgCU---------------CCA-----CCCCCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 71386 0.67 0.426823
Target:  5'- --cGGCCCUgGAGGgguuuuugguggcgGGGGuGCCCGCgCGg -3'
miRNA:   3'- cuaCCGGGG-CUCCa-------------CCCC-CGGGUG-GU- -5'
5134 3' -65.5 NC_001798.1 + 73247 0.66 0.48418
Target:  5'- cGggGGcCCCCGGGGaccUGGaGGCCCaagauGCCGg -3'
miRNA:   3'- -CuaCC-GGGGCUCC---ACCcCCGGG-----UGGU- -5'
5134 3' -65.5 NC_001798.1 + 74652 0.71 0.237267
Target:  5'- --aGGCCCCccGGGG-GGccucGGGCCCACCc -3'
miRNA:   3'- cuaCCGGGG--CUCCaCC----CCCGGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 74855 0.74 0.153046
Target:  5'- uGcgGGUCCUgGAGGUGGGGGCagugccggugggucgCCACCGg -3'
miRNA:   3'- -CuaCCGGGG-CUCCACCCCCG---------------GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 75301 0.68 0.370622
Target:  5'- -cUGGCCCgCGAGGUGGccgcguguucgcaGCUCACCAu -3'
miRNA:   3'- cuACCGGG-GCUCCACCcc-----------CGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 76037 0.69 0.317628
Target:  5'- --gGGCCCCGAGGccauccaggcgcggcUGGaGgacgugcggauccaGGCCCGCCGg -3'
miRNA:   3'- cuaCCGGGGCUCC---------------ACC-C--------------CCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 77357 0.71 0.242749
Target:  5'- -cUGGCCCUgGAGGcgcGGGGGgCCAUCGa -3'
miRNA:   3'- cuACCGGGG-CUCCa--CCCCCgGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 85280 0.67 0.440363
Target:  5'- --aGGCUUCGGGGgggcGGGGGCcgggguCCGCCc -3'
miRNA:   3'- cuaCCGGGGCUCCa---CCCCCG------GGUGGu -5'
5134 3' -65.5 NC_001798.1 + 91232 0.66 0.493195
Target:  5'- --cGGUCUgagCGAGGUGGGGGUuguagaaguuCUGCCGg -3'
miRNA:   3'- cuaCCGGG---GCUCCACCCCCG----------GGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.