miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 3' -65.5 NC_001798.1 + 91292 0.7 0.288543
Target:  5'- gGGUGGCucCCCGGGGguugugGGGGGCaaaaaacccagacgCCGCCc -3'
miRNA:   3'- -CUACCG--GGGCUCCa-----CCCCCG--------------GGUGGu -5'
5134 3' -65.5 NC_001798.1 + 95018 0.72 0.19248
Target:  5'- cGcgGGCCUgGAGGccGGGGCCCGCg- -3'
miRNA:   3'- -CuaCCGGGgCUCCacCCCCGGGUGgu -5'
5134 3' -65.5 NC_001798.1 + 95317 0.66 0.48418
Target:  5'- --cGaGUCUCGGGG-GcGGGGCCCACgAg -3'
miRNA:   3'- cuaC-CGGGGCUCCaC-CCCCGGGUGgU- -5'
5134 3' -65.5 NC_001798.1 + 95572 0.73 0.166895
Target:  5'- aGGUGGCCCaCGAGGcGGaGGCCCuggucaGCCAg -3'
miRNA:   3'- -CUACCGGG-GCUCCaCCcCCGGG------UGGU- -5'
5134 3' -65.5 NC_001798.1 + 98636 0.66 0.483283
Target:  5'- cGUGGCCgCGAccgucgcGGcgaacGGGGGuCCCGCCu -3'
miRNA:   3'- cUACCGGgGCU-------CCa----CCCCC-GGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 102428 0.66 0.475244
Target:  5'- --gGGCCuCCaGGGGacuGGGGCCCGCgAa -3'
miRNA:   3'- cuaCCGG-GG-CUCCac-CCCCGGGUGgU- -5'
5134 3' -65.5 NC_001798.1 + 106804 0.68 0.345208
Target:  5'- --cGGaCCCCacGGGGUGGGGaagaCCACCAc -3'
miRNA:   3'- cuaCC-GGGG--CUCCACCCCcg--GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 108478 0.68 0.360005
Target:  5'- cGAgcuCCCCGAGGc-GGGGCCCACg- -3'
miRNA:   3'- -CUaccGGGGCUCCacCCCCGGGUGgu -5'
5134 3' -65.5 NC_001798.1 + 109568 0.72 0.187989
Target:  5'- cGGUGGCCCCGAGc--GcGGCCCGCCu -3'
miRNA:   3'- -CUACCGGGGCUCcacCcCCGGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 119427 0.67 0.404545
Target:  5'- -cUGGCCCCGGcGGUucGGGuguguacguucgacGGCgCCGCCGu -3'
miRNA:   3'- cuACCGGGGCU-CCA--CCC--------------CCG-GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 121293 0.69 0.337976
Target:  5'- ---cGCCCCGAcGGUGGGGcGgCCGCgAa -3'
miRNA:   3'- cuacCGGGGCU-CCACCCC-CgGGUGgU- -5'
5134 3' -65.5 NC_001798.1 + 123418 0.69 0.330854
Target:  5'- --cGGCCCCGccGGGUcaccGGGGcGCCCcCCc -3'
miRNA:   3'- cuaCCGGGGC--UCCA----CCCC-CGGGuGGu -5'
5134 3' -65.5 NC_001798.1 + 127338 0.67 0.390901
Target:  5'- cGUGGCCCCGAGccUGGGcGUCC-CCGu -3'
miRNA:   3'- cUACCGGGGCUCc-ACCCcCGGGuGGU- -5'
5134 3' -65.5 NC_001798.1 + 130130 0.69 0.330854
Target:  5'- --cGGCCUCGuGGUcGGGGG-CCACUu -3'
miRNA:   3'- cuaCCGGGGCuCCA-CCCCCgGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 130538 1.07 0.000506
Target:  5'- cGAUGGCCCCGAGGUGGGGGCCCACCAa -3'
miRNA:   3'- -CUACCGGGGCUCCACCCCCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 131371 0.76 0.109959
Target:  5'- --cGGCCUCGGGGgauccccUGGGGGCCCGgCGu -3'
miRNA:   3'- cuaCCGGGGCUCC-------ACCCCCGGGUgGU- -5'
5134 3' -65.5 NC_001798.1 + 132115 0.66 0.466392
Target:  5'- --gGGgCCCGAGGUccugcaGGcGGCCCugCGc -3'
miRNA:   3'- cuaCCgGGGCUCCA------CCcCCGGGugGU- -5'
5134 3' -65.5 NC_001798.1 + 134341 0.67 0.410251
Target:  5'- -cUGGUCgUGAGGgucgaaagggcgucGuGGGGCCCGCCGg -3'
miRNA:   3'- cuACCGGgGCUCCa-------------C-CCCCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 134835 0.67 0.390901
Target:  5'- --gGGCCCggguuUGAGGUccggGGaGGGCCCGuCCAa -3'
miRNA:   3'- cuaCCGGG-----GCUCCA----CC-CCCGGGU-GGU- -5'
5134 3' -65.5 NC_001798.1 + 141204 0.67 0.406985
Target:  5'- --gGGCCCgCGGGacGGGGGCCCGg-- -3'
miRNA:   3'- cuaCCGGG-GCUCcaCCCCCGGGUggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.