Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 127338 | 0.67 | 0.390901 |
Target: 5'- cGUGGCCCCGAGccUGGGcGUCC-CCGu -3' miRNA: 3'- cUACCGGGGCUCc-ACCCcCGGGuGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 134835 | 0.67 | 0.390901 |
Target: 5'- --gGGCCCggguuUGAGGUccggGGaGGGCCCGuCCAa -3' miRNA: 3'- cuaCCGGG-----GCUCCA----CC-CCCGGGU-GGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 25924 | 0.67 | 0.398891 |
Target: 5'- -cUGGCCUgCGAGGUGcu-GCCCGCCGg -3' miRNA: 3'- cuACCGGG-GCUCCACcccCGGGUGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 119427 | 0.67 | 0.404545 |
Target: 5'- -cUGGCCCCGGcGGUucGGGuguguacguucgacGGCgCCGCCGu -3' miRNA: 3'- cuACCGGGGCU-CCA--CCC--------------CCG-GGUGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 141204 | 0.67 | 0.406985 |
Target: 5'- --gGGCCCgCGGGacGGGGGCCCGg-- -3' miRNA: 3'- cuaCCGGG-GCUCcaCCCCCGGGUggu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 134341 | 0.67 | 0.410251 |
Target: 5'- -cUGGUCgUGAGGgucgaaagggcgucGuGGGGCCCGCCGg -3' miRNA: 3'- cuACCGGgGCUCCa-------------C-CCCCGGGUGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 59147 | 0.67 | 0.41518 |
Target: 5'- cGAUGGCaCCCacgcaggcGAGGcGGGGGCgC-CCGu -3' miRNA: 3'- -CUACCG-GGG--------CUCCaCCCCCGgGuGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 3556 | 0.67 | 0.41518 |
Target: 5'- cAUGGCguaCCCcAGGUGGGGcacgGCCCgcGCCAc -3' miRNA: 3'- cUACCG---GGGcUCCACCCC----CGGG--UGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 15942 | 0.67 | 0.423477 |
Target: 5'- --gGGCCCCGGGGgcccaaugGGGcGGCagACCc -3' miRNA: 3'- cuaCCGGGGCUCCa-------CCC-CCGggUGGu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 71386 | 0.67 | 0.426823 |
Target: 5'- --cGGCCCUgGAGGgguuuuugguggcgGGGGuGCCCGCgCGg -3' miRNA: 3'- cuaCCGGGG-CUCCa-------------CCCC-CGGGUG-GU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 16117 | 0.67 | 0.43951 |
Target: 5'- --aGGCcacgaaaCCCGGGGuUGGGGGCggaaUACCAu -3' miRNA: 3'- cuaCCG-------GGGCUCC-ACCCCCGg---GUGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 85280 | 0.67 | 0.440363 |
Target: 5'- --aGGCUUCGGGGgggcGGGGGCcgggguCCGCCc -3' miRNA: 3'- cuaCCGGGGCUCCa---CCCCCG------GGUGGu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 145634 | 0.67 | 0.440363 |
Target: 5'- ---cGCCCCGcccGGcagGGGGGCCCcggcGCCGc -3' miRNA: 3'- cuacCGGGGCu--CCa--CCCCCGGG----UGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 14130 | 0.67 | 0.440363 |
Target: 5'- --gGGCgaUGGGGUGGGGGCaagGCCAg -3' miRNA: 3'- cuaCCGggGCUCCACCCCCGgg-UGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 27585 | 0.66 | 0.445503 |
Target: 5'- --cGGCUCCGGGGgagggacggggaaGGGGGCgCGCgGg -3' miRNA: 3'- cuaCCGGGGCUCCa------------CCCCCGgGUGgU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 26534 | 0.66 | 0.448949 |
Target: 5'- --cGGCgUgGAGGUGGuGGGgaCCGCCGc -3' miRNA: 3'- cuaCCGgGgCUCCACC-CCCg-GGUGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 132115 | 0.66 | 0.466392 |
Target: 5'- --gGGgCCCGAGGUccugcaGGcGGCCCugCGc -3' miRNA: 3'- cuaCCgGGGCUCCA------CCcCCGGGugGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 149673 | 0.66 | 0.466392 |
Target: 5'- cGcgGGCCCCGGGcucGGGG-CCGCCc -3' miRNA: 3'- -CuaCCGGGGCUCcacCCCCgGGUGGu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 152167 | 0.66 | 0.466392 |
Target: 5'- gGGUGG-UCCGGGGaaaaggGGGGGCCUgagACCc -3' miRNA: 3'- -CUACCgGGGCUCCa-----CCCCCGGG---UGGu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 44492 | 0.66 | 0.475244 |
Target: 5'- gGGUGcGCCCUuucGGGUGGuGGGUCaCGCCc -3' miRNA: 3'- -CUAC-CGGGGc--UCCACC-CCCGG-GUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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